BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0608500 Os06g0608500|AK070667
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0608500 Snf7 family protein 356 6e-99
Os09g0267600 Snf7 family protein 224 4e-59
Os11g0123500 Snf7 family protein 197 5e-51
Os12g0121400 Snf7 family protein 193 1e-49
Os07g0490700 Snf7 family protein 67 9e-12
>Os06g0608500 Snf7 family protein
Length = 220
Score = 356 bits (914), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 183/220 (83%), Positives = 183/220 (83%)
Query: 1 MSGVFGKVFGKSKAQSQATALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKN 60
MSGVFGKVFGKSKAQSQATALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKN
Sbjct: 1 MSGVFGKVFGKSKAQSQATALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKN 60
Query: 61 KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHK 120
KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHK
Sbjct: 61 KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHK 120
Query: 121 ATNIDDVDKTMDEINDNMENMRQIQDLLSAPIGXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
ATNIDDVDKTMDEINDNMENMRQIQDLLSAPIG
Sbjct: 121 ATNIDDVDKTMDEINDNMENMRQIQDLLSAPIGAAADFDEDELEAELADLEGEELEAELL 180
Query: 181 XXXXXXXXXXVRVQQPTRPSAQSSKTEDDELAALQAEMAM 220
VRVQQPTRPSAQSSKTEDDELAALQAEMAM
Sbjct: 181 APTTTAPTAPVRVQQPTRPSAQSSKTEDDELAALQAEMAM 220
>Os09g0267600 Snf7 family protein
Length = 220
Score = 224 bits (570), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/220 (61%), Positives = 159/220 (72%), Gaps = 3/220 (1%)
Query: 4 VFGKVFGKSKAQSQATALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRA 63
+F ++FGK K Q+ A+ALA++DKL+ETL+MLEKKE +L KKA E+E+AK F+KAKNKRA
Sbjct: 1 MFNRLFGKPKEQANASALATLDKLNETLDMLEKKEKVLEKKAAAELERAKEFSKAKNKRA 60
Query: 64 AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATN 123
AIQ LKRK+LYEQQIEQLGNFQLRIHDQMIMLE AKATTETVDALRTGA+AMKAM KATN
Sbjct: 61 AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATN 120
Query: 124 IDDVDKTMDEINDNMENMRQIQDLLSAPIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183
IDDVDKTMDEIN+ ENM+QIQD LSAP+G
Sbjct: 121 IDDVDKTMDEINEQTENMKQIQDALSAPLGASADFDEDELEAELEELEGAELESQLLEPV 180
Query: 184 XXXXXXXVRVQQ---PTRPSAQSSKTEDDELAALQAEMAM 220
V+V PTRP+ Q + E+DELAALQAEMA+
Sbjct: 181 AAPPVHPVQVPGTRIPTRPAPQKASAEEDELAALQAEMAL 220
>Os11g0123500 Snf7 family protein
Length = 216
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/139 (65%), Positives = 120/139 (86%)
Query: 15 QSQATALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRAAIQCLKRKRLY 74
++ ++AL ++D+L ETLEMLEKKE L KKA+ EVEKAK +TKAKNK AAIQCLK+K+LY
Sbjct: 15 EAASSALPTLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLY 74
Query: 75 EQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATNIDDVDKTMDEI 134
E QIEQL NFQLR+HDQ+IMLE AKATT+TVDALR+G+SA+KA+H++ +IDD++ ++E
Sbjct: 75 ETQIEQLANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEA 134
Query: 135 NDNMENMRQIQDLLSAPIG 153
N++ ENMRQIQ+ L+ PIG
Sbjct: 135 NEHTENMRQIQEALATPIG 153
>Os12g0121400 Snf7 family protein
Length = 216
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 115/133 (86%)
Query: 21 LASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRAAIQCLKRKRLYEQQIEQ 80
L ++D+L ETLEMLEKKE L KKA+ EVE+AK +TKAKNK AAIQCLK+K+LYE QIEQ
Sbjct: 22 LPTLDRLHETLEMLEKKECFLQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQ 81
Query: 81 LGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATNIDDVDKTMDEINDNMEN 140
L NFQLR+HDQ+IMLE AKATT+TVDALR+G+SA+KA+H++ +IDD++ ++E N++ EN
Sbjct: 82 LANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTEN 141
Query: 141 MRQIQDLLSAPIG 153
MRQIQ+ L+ PIG
Sbjct: 142 MRQIQEALATPIG 154
>Os07g0490700 Snf7 family protein
Length = 97
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 52/71 (73%)
Query: 25 DKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRAAIQCLKRKRLYEQQIEQLGNF 84
D+L + ++ KE +L KK + E+E+AK FTK+ NK+AA+QCLKRK+ YE Q+ Q+G+
Sbjct: 17 DQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCLKRKKYYESQMNQVGSV 76
Query: 85 QLRIHDQMIML 95
QLRI+ + M+
Sbjct: 77 QLRINTKEKMI 87
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.124 0.318
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,466,514
Number of extensions: 120285
Number of successful extensions: 516
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 5
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)