Os11g0123500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
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Os11g0123500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Snf7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.16 | 0.352 | 8.64 | -1.09 | 0.0829 | 0.901 | 1.99 | -1.76 | -0.293 | 21 | 0.427 | 769 | -- | -- |
| 57.19 | 0.352 | 8.66 | -1.09 | 0.0834 | 0.905 | 1.44 | -- | -0.318 | 23.3 | 0.1728 | 780 | -- | -- |
| 61.72 | 0.369 | 8.65 | -1.04 | 0.789 | 0.199 | -- | -1.16 | -0.251 | 19.7 | 0.427 | 769 | -- | -- |
| 64.83 | 0.375 | 8.63 | -1.13 | 0.0874 | 0.99 | -- | -- | -0.289 | 0.0626 | 0.4983 | 777 | -- | -- |
| 65.26 | 0.376 | 8.65 | -0.956 | -- | 1.02 | -- | 0.451 | -0.254 | -- | 0.72 | 855 | -- | -- |
| 69.23 | 0.39 | 8.64 | -0.996 | 0.671 | -- | 1.01 | -- | -0.249 | 19.2 | -- | -- | -- | -- |
| 70.99 | 0.395 | 8.64 | -1.01 | 0.693 | -- | -- | -- | -0.244 | 18.5 | -- | -- | -- | -- |
| 64.75 | 0.375 | 8.63 | -1.1 | -- | 1.04 | -- | -- | -0.288 | -- | 0.4919 | 822 | -- | -- |
| 96.54 | 0.458 | 8.63 | -- | 0.205 | 0.889 | -- | -- | -0.19 | 0.167 | 1.5 | 692 | -- | -- |
| 95.96 | 0.458 | 8.63 | -1.03 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 98.01 | 0.463 | 8.62 | -- | 0.706 | -- | -- | -- | -0.131 | 18.5 | -- | -- | -- | -- |
| 96.62 | 0.458 | 8.63 | -- | -- | 0.95 | -- | -- | -0.187 | -- | 0.7246 | 786 | -- | -- |
| 123.92 | 0.52 | 8.6 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 21 | 53.65 | temperature | 10 | 270 | > th | dose dependent | sin | 17 | NA |
| 37 | 54.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 40 | 54.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 8 |
| 42 | 54.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 49 | 54.37 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 52 | 54.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 63 | 54.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 112 | 54.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 16 |
| 113 | 54.75 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 138 | 54.87 | radiation | 1 | 270 | > th | dose independent | sin | 20 | NA |
| 146 | 54.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 164 | 55.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 173 | 55.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 15 |
| 176 | 55.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 19 |
| 225 | 55.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 246 | 55.35 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 288 | 55.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 306 | 55.56 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 307 | 55.57 | humidity | 70 | 90 | > th | dose independent | sin | 14 | NA |
| 314 | 55.60 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 315 | 55.60 | radiation | 1 | 720 | < th | dose dependent | sin | 18 | NA |
| 332 | 55.66 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 9 |
| 340 | 55.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 381 | 55.75 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 382 | 55.76 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 398 | 55.80 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 423 | 55.86 | radiation | 1 | 270 | > th | dose independent | rect. | 11 | 8 |
| 453 | 55.92 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 21 |
| 462 | 55.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 484 | 56.00 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 6 |
| 490 | 56.01 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 21 |
| 507 | 56.04 | radiation | 1 | 720 | > th | dose independent | sin | 12 | NA |
| 517 | 56.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 556 | 56.11 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 14 |
| 564 | 56.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 570 | 56.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 603 | 56.20 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 606 | 56.20 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 22 |
| 620 | 56.22 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 17 |
| 654 | 56.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 656 | 56.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 660 | 56.29 | radiation | 1 | 90 | < th | dose independent | sin | 16 | NA |
| 672 | 56.30 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 6 |
| 678 | 56.31 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 803 | 56.46 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 15 |
| 816 | 56.48 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 9 |
| 825 | 56.48 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 830 | 56.50 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 8 |
| 831 | 56.50 | radiation | 1 | 90 | < th | dose dependent | sin | 16 | NA |
| 850 | 56.53 | humidity | 70 | 270 | > th | dose independent | rect. | 15 | 9 |
| 852 | 56.53 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 15 |
| 858 | 56.54 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 5 |
| 913 | 56.60 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 20 |
| 926 | 56.61 | humidity | 60 | 270 | > th | dose independent | rect. | 17 | 18 |
| 970 | 56.66 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 21 |