Os07g0490700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
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Os07g0490700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Snf7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 222.02 | 0.7 | 3.35 | -1.15 | 0.369 | 1.49 | -1.24 | -4.66 | -0.409 | 4.34 | 24 | 46 | -- | -- |
| 230.99 | 0.708 | 3.29 | -0.527 | 0.339 | 1.2 | -0.427 | -- | -0.252 | 4.71 | 23.27 | 26 | -- | -- |
| 225.58 | 0.7 | 3.33 | -1.08 | 0.396 | 1.52 | -- | -3.99 | -0.395 | 4.34 | 24.01 | 46 | -- | -- |
| 231.25 | 0.708 | 3.28 | -0.541 | 0.326 | 1.13 | -- | -- | -0.249 | 5.32 | 23.28 | 46 | -- | -- |
| 230.34 | 0.707 | 3.31 | -0.867 | -- | 1.12 | -- | -3.06 | -0.292 | -- | 23.99 | 44 | -- | -- |
| 250.6 | 0.742 | 3.24 | -0.34 | 0.235 | -- | 0.402 | -- | -0.0818 | 13.2 | -- | -- | -- | -- |
| 251.11 | 0.742 | 3.24 | -0.327 | 0.237 | -- | -- | -- | -0.0806 | 12.4 | -- | -- | -- | -- |
| 234.94 | 0.714 | 3.27 | -0.496 | -- | 0.892 | -- | -- | -0.204 | -- | 23.1 | 42 | -- | -- |
| 237.19 | 0.717 | 3.26 | -- | 0.355 | 0.983 | -- | -- | -0.145 | 6.49 | 23.54 | 159 | -- | -- |
| 254.65 | 0.746 | 3.25 | -0.335 | -- | -- | -- | -- | -0.0844 | -- | -- | -- | -- | -- |
| 253.93 | 0.745 | 3.23 | -- | 0.242 | -- | -- | -- | -0.0442 | 12.4 | -- | -- | -- | -- |
| 240.85 | 0.723 | 3.26 | -- | -- | 0.816 | -- | -- | -0.141 | -- | 23.3 | 24 | -- | -- |
| 257.61 | 0.749 | 3.24 | -- | -- | -- | -- | -- | -0.0473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 4 | 220.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 6 | 220.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 7 | 220.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 40 | 222.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 11 |
| 52 | 222.70 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 53 | 222.70 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 74 | 223.24 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 77 | 223.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 78 | 223.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 80 | 223.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 90 | 223.53 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 96 | 223.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 11 |
| 103 | 223.65 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 107 | 223.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 17 |
| 119 | 223.76 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 128 | 223.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 129 | 223.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 144 | 223.96 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 11 |
| 145 | 223.97 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 154 | 224.03 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 14 |
| 201 | 224.27 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 9 |
| 264 | 224.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 285 | 224.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 309 | 224.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 314 | 224.77 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 349 | 224.97 | temperature | 25 | 30 | > th | dose dependent | sin | 20 | NA |
| 355 | 224.99 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 14 |
| 418 | 225.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 435 | 225.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 436 | 225.54 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 10 |
| 444 | 225.56 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 459 | 225.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 4 |
| 517 | 225.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 518 | 225.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 550 | 226.03 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 4 |
| 574 | 226.12 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 604 | 226.25 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |
| 666 | 226.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 687 | 226.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 695 | 226.65 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 11 |
| 717 | 226.73 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 7 |
| 731 | 226.80 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 4 |
| 751 | 226.92 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 763 | 227.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 822 | 227.25 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 854 | 227.45 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 7 |
| 866 | 227.49 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 923 | 227.69 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |