BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0490700 Os07g0490700|AK108737
         (97 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0490700  Snf7 family protein                                 199   4e-52
Os12g0121400  Snf7 family protein                                  70   3e-13
Os11g0123500  Snf7 family protein                                  69   1e-12
Os06g0608500  Snf7 family protein                                  67   2e-12
Os09g0267600  Snf7 family protein                                  64   2e-11

>Os07g0490700 Snf7 family protein
          Length = 97

 Score =  199 bits (506), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MFAWLLRGCRDECSASDQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCL 60
          MFAWLLRGCRDECSASDQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCL
Sbjct: 1  MFAWLLRGCRDECSASDQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCL 60

Query: 61 KRKKYYESQMNQVGSVQLRINTKEKMIADHSGNKEDK 97
          KRKKYYESQMNQVGSVQLRINTKEKMIADHSGNKEDK
Sbjct: 61 KRKKYYESQMNQVGSVQLRINTKEKMIADHSGNKEDK 97



>Os12g0121400 Snf7 family protein
          Length = 216

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 49/65 (75%)

Query: 17 DQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCLKRKKYYESQMNQVGSV 76
          D+L +  ++   KE  LQKK S E+ERAK++TK+ NK AA+QCLK+KK YE+Q+ Q+ + 
Sbjct: 26 DRLHETLEMLEKKECFLQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQLANF 85

Query: 77 QLRIN 81
          QLR++
Sbjct: 86 QLRVH 90



>Os11g0123500 Snf7 family protein
          Length = 216

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 49/65 (75%)

Query: 17 DQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCLKRKKYYESQMNQVGSV 76
          D+L +  ++   KE  LQKK S E+E+AK++TK+ NK AA+QCLK+KK YE+Q+ Q+ + 
Sbjct: 25 DRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQLANF 84

Query: 77 QLRIN 81
          QLR++
Sbjct: 85 QLRVH 89



>Os06g0608500 Snf7 family protein
          Length = 220

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 52/71 (73%)

Query: 17 DQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCLKRKKYYESQMNQVGSV 76
          D+L +  ++   KE +L KK + E+E+AK FTK+ NK+AA+QCLKRK+ YE Q+ Q+G+ 
Sbjct: 25 DKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRAAIQCLKRKRLYEQQIEQLGNF 84

Query: 77 QLRINTKEKMI 87
          QLRI+ +  M+
Sbjct: 85 QLRIHDQMIML 95



>Os09g0267600 Snf7 family protein
          Length = 220

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 5/92 (5%)

Query: 1  MFAWLLRGCRDECSAS-----DQLKQARDVFVAKEAVLQKKISQEMERAKEFTKSGNKQA 55
          MF  L    +++ +AS     D+L +  D+   KE VL+KK + E+ERAKEF+K+ NK+A
Sbjct: 1  MFNRLFGKPKEQANASALATLDKLNETLDMLEKKEKVLEKKAAAELERAKEFSKAKNKRA 60

Query: 56 AMQCLKRKKYYESQMNQVGSVQLRINTKEKMI 87
          A+Q LKRKK YE Q+ Q+G+ QLRI+ +  M+
Sbjct: 61 AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIML 92



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.125    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,637,483
Number of extensions: 73016
Number of successful extensions: 253
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 5
Length of query: 97
Length of database: 17,035,801
Length adjustment: 66
Effective length of query: 31
Effective length of database: 13,589,677
Effective search space: 421279987
Effective search space used: 421279987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)