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Os09g0267600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Snf7 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.00973) R2 : 0.847
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.03 (0.0205) R2dN8 : 1.09 R2N8 : 0.847
σ : 0.183
deviance : 15.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
9.48 0.145 12.5 0.0244 0.57 -0.342 0.253 -0.167 -1.05 2.74 0.06 124 -- --
9.58 0.144 12.5 0.0439 0.581 -0.346 0.129 -- -1.05 2.71 0.08 121 -- --
9.58 0.144 12.5 0.00915 0.567 -0.344 -- -0.0388 -1.04 2.8 0.06012 123 -- --
9.56 0.144 12.5 0.0221 0.58 -0.348 -- -- -1.06 2.73 0.06026 123 -- --
11.28 0.156 12.5 0.0631 -- 0.327 -- -0.161 -1.01 -- 13.74 638 -- --
10.98 0.155 12.5 0.045 0.289 -- -0.0796 -- -1.03 5.49 -- -- -- --
10.99 0.155 12.5 0.0447 0.289 -- -- -- -1.03 5.48 -- -- -- --
11.31 0.157 12.5 0.0467 -- 0.329 -- -- -1.01 -- 10 671 -- --
9.55 0.144 12.5 -- 0.573 -0.34 -- -- -1.06 2.77 0.0589 123 -- --
15.34 0.183 12.5 0.0543 -- -- -- -- -1.02 -- -- -- -- --
11.05 0.155 12.5 -- 0.29 -- -- -- -1.03 5.47 -- -- -- --
11.37 0.157 12.5 -- -- 0.328 -- -- -1.02 -- 10 668 -- --
15.41 0.183 12.5 -- -- -- -- -- -1.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 7.78 temperature 20.0 270 > th dose dependent rect. 4 3
4 7.98 temperature 25.0 10 > th dose independent rect. 5 4
9 8.04 temperature 20.0 10 > th dose dependent rect. 5 4
17 8.19 temperature 20.0 270 > th dose independent rect. 4 3
26 8.25 radiation 1.0 90 > th dose independent rect. 18 15
30 8.27 wind 3.0 10 < th dose independent rect. 6 3
33 8.30 wind 7.0 10 < th dose dependent rect. 6 3
35 8.31 humidity 90.0 10 < th dose independent rect. 6 3
38 8.32 atmosphere 1000.0 10 > th dose dependent rect. 6 3
39 8.32 radiation 40.0 10 < th dose dependent rect. 6 3
49 8.35 radiation 1.0 90 > th dose independent rect. 5 4
63 8.36 radiation 30.0 10 < th dose independent rect. 6 3
72 8.39 humidity 70.0 30 > th dose independent rect. 6 3
81 8.43 humidity 70.0 90 > th dose independent rect. 6 1
82 8.43 radiation 20.0 90 < th dose independent rect. 6 1
86 8.44 radiation 10.0 270 < th dose independent rect. 4 3
89 8.45 wind 1.0 90 > th dose independent rect. 6 1
90 8.45 wind 3.0 90 < th dose independent rect. 6 1
95 8.45 temperature 10.0 10 > th dose independent rect. 6 3
99 8.45 temperature 30.0 10 < th dose independent rect. 6 3
101 8.45 humidity 50.0 10 > th dose independent rect. 6 3
105 8.45 atmosphere 995.0 10 > th dose independent rect. 6 3
107 8.45 atmosphere 1015.0 10 < th dose independent rect. 6 3
109 8.45 precipitation 0.1 10 < th dose independent rect. 6 3
111 8.45 temperature 10.0 10 > th dose independent rect. 9 21
116 8.45 precipitation 0.1 10 < th dose dependent rect. 6 3
121 8.46 temperature 10.0 90 > th dose independent rect. 6 1
123 8.46 temperature 30.0 90 < th dose independent rect. 6 1
124 8.46 humidity 50.0 90 > th dose independent rect. 6 1
126 8.46 atmosphere 995.0 90 > th dose independent rect. 6 1
127 8.46 atmosphere 1015.0 90 < th dose independent rect. 6 1
130 8.46 precipitation 0.1 90 < th dose independent rect. 6 1
131 8.46 temperature 10.0 1440 > th dose independent rect. 7 3
135 8.46 atmosphere 995.0 1440 > th dose independent rect. 7 3
136 8.46 atmosphere 1015.0 1440 < th dose independent rect. 7 3
149 8.46 temperature 10.0 1440 > th dose independent rect. 10 21
152 8.46 temperature 10.0 90 > th dose independent rect. 7 23
153 8.46 precipitation 0.1 90 < th dose dependent rect. 6 1
155 8.48 radiation 1.0 90 > th dose independent rect. 6 1
158 8.48 wind 9.0 90 < th dose dependent rect. 6 1
161 8.49 wind 9.0 30 < th dose independent rect. 9 21
164 8.49 radiation 40.0 90 < th dose dependent rect. 6 1
165 8.50 humidity 90.0 90 < th dose independent rect. 6 1
167 8.50 humidity 50.0 90 > th dose dependent rect. 6 1
168 8.50 humidity 50.0 30 > th dose dependent rect. 6 3
170 8.50 radiation 40.0 10 < th dose dependent rect. 6 5
174 8.52 wind 1.0 30 > th dose independent rect. 6 3
175 8.52 atmosphere 995.0 10 > th dose independent rect. 9 21
177 8.52 precipitation 0.1 30 < th dose independent rect. 9 21
181 8.52 precipitation 0.1 30 < th dose dependent rect. 9 21
184 8.53 atmosphere 1005.0 10 > th dose independent rect. 6 3
198 8.53 atmosphere 995.0 90 > th dose dependent rect. 6 1
227 8.61 precipitation 0.1 90 < th dose independent rect. 7 23
231 8.61 precipitation 0.1 90 < th dose dependent rect. 7 23
232 8.62 radiation 1.0 90 > th dose independent sin 10 NA
233 8.62 radiation 1.0 90 < th dose independent sin 10 NA
244 8.64 radiation 1.0 90 < th dose dependent sin 10 NA
251 8.65 wind 9.0 90 < th dose independent rect. 7 23
252 8.65 atmosphere 1000.0 30 > th dose independent rect. 7 23
267 8.67 atmosphere 1015.0 10 < th dose independent rect. 9 21
298 8.71 temperature 25.0 30 > th dose independent rect. 1 8
299 8.71 temperature 10.0 720 > th dose dependent rect. 21 10
301 8.71 radiation 1.0 90 > th dose dependent rect. 18 13
312 8.73 radiation 40.0 1440 < th dose independent rect. 7 1
326 8.74 radiation 1.0 90 > th dose dependent rect. 5 2
331 8.75 wind 9.0 1440 < th dose independent rect. 7 1
336 8.75 temperature 10.0 1440 > th dose independent rect. 7 1
341 8.75 temperature 30.0 1440 < th dose independent rect. 7 1
349 8.75 humidity 50.0 1440 > th dose independent rect. 7 1
354 8.75 humidity 90.0 10 < th dose independent rect. 6 1
358 8.75 atmosphere 995.0 1440 > th dose independent rect. 7 1
360 8.75 atmosphere 1015.0 1440 < th dose independent rect. 7 1
379 8.75 temperature 10.0 1440 > th dose independent rect. 8 23
395 8.75 temperature 20.0 720 > th dose dependent rect. 21 10
463 8.78 radiation 20.0 10 < th dose dependent rect. 6 1
491 8.80 temperature 30.0 30 < th dose dependent rect. 6 1
524 8.82 temperature 10.0 270 > th dose independent rect. 7 21
525 8.82 precipitation 0.1 270 < th dose independent rect. 7 21
531 8.82 precipitation 0.1 270 < th dose dependent rect. 7 21
557 8.85 humidity 50.0 1440 > th dose independent rect. 7 3
561 8.85 wind 9.0 270 < th dose independent rect. 7 21
585 8.86 atmosphere 1015.0 30 < th dose dependent rect. 6 1
595 8.87 humidity 50.0 270 > th dose independent rect. 7 21
596 8.87 humidity 90.0 10 < th dose dependent rect. 6 1
604 8.87 temperature 30.0 720 < th dose dependent rect. 23 5
621 8.89 humidity 50.0 30 > th dose independent rect. 9 21
657 8.91 atmosphere 995.0 270 > th dose independent rect. 7 21
660 8.91 wind 1.0 90 > th dose dependent rect. 6 1
698 8.94 temperature 30.0 10 < th dose independent rect. 9 21
712 8.95 wind 1.0 270 > th dose independent rect. 3 4
726 8.96 radiation 1.0 720 < th dose independent rect. 18 1
736 8.96 humidity 50.0 90 > th dose independent rect. 7 23
773 8.97 humidity 70.0 10 > th dose independent rect. 18 12
814 8.99 humidity 80.0 90 > th dose independent rect. 5 13
829 9.00 wind 1.0 30 > th dose independent rect. 9 21
857 9.01 radiation 10.0 10 < th dose independent rect. 6 10
894 9.03 temperature 30.0 90 < th dose independent rect. 9 20
937 9.06 temperature 30.0 30 < th dose independent rect. 7 23
950 9.07 temperature 30.0 720 < th dose independent rect. 16 3
961 9.08 humidity 50.0 720 > th dose independent rect. 16 3