BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0267600 Os09g0267600|AK065728
         (220 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0267600  Snf7 family protein                                 246   1e-65
Os06g0608500  Snf7 family protein                                 213   1e-55
Os11g0123500  Snf7 family protein                                 166   2e-41
Os12g0121400  Snf7 family protein                                 160   6e-40

>Os09g0267600 Snf7 family protein
          Length = 220

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/203 (70%), Positives = 143/203 (70%)

Query: 1   MFNRLFGKPKEQANASALATLDKLNETLDMXXXXXXXXXXXXXXXXXXXXXFSKAKNKRA 60
           MFNRLFGKPKEQANASALATLDKLNETLDM                     FSKAKNKRA
Sbjct: 1   MFNRLFGKPKEQANASALATLDKLNETLDMLEKKEKVLEKKAAAELERAKEFSKAKNKRA 60

Query: 61  AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATN 120
           AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATN
Sbjct: 61  AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATN 120

Query: 121 IDDVDKTMDEINEQTENMKQIQDALSAPLGASXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           IDDVDKTMDEINEQTENMKQIQDALSAPLGAS                            
Sbjct: 121 IDDVDKTMDEINEQTENMKQIQDALSAPLGASADFDEDELEAELEELEGAELESQLLEPV 180

Query: 181 XXXXXXXXXXXGTRIPTRPAPQK 203
                      GTRIPTRPAPQK
Sbjct: 181 AAPPVHPVQVPGTRIPTRPAPQK 203



>Os06g0608500 Snf7 family protein
          Length = 220

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 121/152 (79%)

Query: 1   MFNRLFGKPKEQANASALATLDKLNETLDMXXXXXXXXXXXXXXXXXXXXXFSKAKNKRA 60
           +F ++FGK K Q+ A+ALA++DKL+ETL+M                     F+KAKNKRA
Sbjct: 4   VFGKVFGKSKAQSQATALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRA 63

Query: 61  AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATN 120
           AIQ LKRK+LYEQQIEQLGNFQLRIHDQMIMLE AKATTETVDALRTGA+AMKAM KATN
Sbjct: 64  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATN 123

Query: 121 IDDVDKTMDEINEQTENMKQIQDALSAPLGAS 152
           IDDVDKTMDEIN+  ENM+QIQD LSAP+GA+
Sbjct: 124 IDDVDKTMDEINDNMENMRQIQDLLSAPIGAA 155



>Os11g0123500 Snf7 family protein
          Length = 216

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 107/141 (75%)

Query: 12  QANASALATLDKLNETLDMXXXXXXXXXXXXXXXXXXXXXFSKAKNKRAAIQSLKRKKLY 71
           +A +SAL TLD+L+ETL+M                     ++KAKNK AAIQ LK+KKLY
Sbjct: 15  EAASSALPTLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLY 74

Query: 72  EQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDEI 131
           E QIEQL NFQLR+HDQ+IMLE+AKATT+TVDALR+G++A+KA+ ++ +IDD++  ++E 
Sbjct: 75  ETQIEQLANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEA 134

Query: 132 NEQTENMKQIQDALSAPLGAS 152
           NE TENM+QIQ+AL+ P+GAS
Sbjct: 135 NEHTENMRQIQEALATPIGAS 155



>Os12g0121400 Snf7 family protein
          Length = 216

 Score =  160 bits (405), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 102/135 (75%)

Query: 18  LATLDKLNETLDMXXXXXXXXXXXXXXXXXXXXXFSKAKNKRAAIQSLKRKKLYEQQIEQ 77
           L TLD+L+ETL+M                     ++KAKNK AAIQ LK+KKLYE QIEQ
Sbjct: 22  LPTLDRLHETLEMLEKKECFLQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQ 81

Query: 78  LGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDEINEQTEN 137
           L NFQLR+HDQ+IMLE+AKATT+TVDALR+G++A+KA+ ++ +IDD++  ++E NE TEN
Sbjct: 82  LANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTEN 141

Query: 138 MKQIQDALSAPLGAS 152
           M+QIQ+AL+ P+GAS
Sbjct: 142 MRQIQEALATPIGAS 156



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.124    0.326 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,564,638
Number of extensions: 75298
Number of successful extensions: 304
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 5
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)