BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0123400 Os11g0123400|011-067-C02
(97 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0123400 Cytidylyltransferase domain containing protein 202 3e-53
Os12g0121300 Similar to Phosphoethanolamine cytidylyltransf... 170 3e-43
Os10g0387000 Similar to Choline phosphate cytidylyltransfer... 147 2e-36
Os02g0173500 Similar to Cholinephosphate cytidylyltransferase 78 1e-15
Os10g0578900 Similar to CTP:phosphorylcholine cytidylyltran... 71 2e-13
Os08g0161800 Similar to Cholinephosphate cytidylyltransferase 71 2e-13
>Os11g0123400 Cytidylyltransferase domain containing protein
Length = 97
Score = 202 bits (515), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MFLFLIYRLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGTD 60
MFLFLIYRLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGTD
Sbjct: 1 MFLFLIYRLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGTD 60
Query: 61 AYALAKKVGRFKQIKRTEGVSTTDIVGTDSVLFCFNH 97
AYALAKKVGRFKQIKRTEGVSTTDIVGTDSVLFCFNH
Sbjct: 61 AYALAKKVGRFKQIKRTEGVSTTDIVGTDSVLFCFNH 97
>Os12g0121300 Similar to Phosphoethanolamine cytidylyltransferase
Length = 424
Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/87 (93%), Positives = 83/87 (95%), Gaps = 2/87 (2%)
Query: 8 RLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKK 67
RLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKK
Sbjct: 112 RLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKK 171
Query: 68 VGRFKQIKRTEGVSTTDIVGTDSVLFC 94
VGR+KQIKRTEGVSTTDIVG +L C
Sbjct: 172 VGRYKQIKRTEGVSTTDIVG--RMLLC 196
>Os10g0387000 Similar to Choline phosphate cytidylyltransferase-like protein
(Fragment)
Length = 425
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/95 (72%), Positives = 79/95 (83%), Gaps = 2/95 (2%)
Query: 3 LFLIYRLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGTDAY 62
L + RL +V +KWV +VIP+APY ITE+FMN LFN+YNIDYIIHGDDPCLLPDGTDAY
Sbjct: 119 LSMEERLTLVSGLKWVDEVIPNAPYEITEEFMNTLFNKYNIDYIIHGDDPCLLPDGTDAY 178
Query: 63 ALAKKVGRFKQIKRTEGVSTTDIVGTDSVLFCFNH 97
ALAKKVGR+KQIKRTEGVS+TDIVG +L F
Sbjct: 179 ALAKKVGRYKQIKRTEGVSSTDIVG--RILLTFKQ 211
>Os02g0173500 Similar to Cholinephosphate cytidylyltransferase
Length = 315
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 6/77 (7%)
Query: 12 VRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGT--DAYALAKKVG 69
+R KWV +VIPDAP+ +TE+F+NK +NID++ H P G D Y KK+G
Sbjct: 112 LRHCKWVDEVIPDAPWVVTEEFLNK----HNIDFVAHDSLPYADASGAGNDVYEFVKKLG 167
Query: 70 RFKQIKRTEGVSTTDIV 86
+FK+ +RT+G+ST+DI+
Sbjct: 168 KFKETQRTDGISTSDII 184
>Os10g0578900 Similar to CTP:phosphorylcholine cytidylyltransferase (EC 2.7.7.15)
Length = 289
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 8 RLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDG--TDAYALA 65
R +R KWV +VIPDAP+ +T++F++K + IDY+ H P G D Y
Sbjct: 92 RYESLRHCKWVDEVIPDAPWVLTQEFIDK----HQIDYVAHDALPYADTSGAANDVYEFV 147
Query: 66 KKVGRFKQIKRTEGVSTTDIV 86
KK+G+FK+ KRT+GVST+D++
Sbjct: 148 KKIGKFKETKRTDGVSTSDLI 168
>Os08g0161800 Similar to Cholinephosphate cytidylyltransferase
Length = 281
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 8 RLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDG--TDAYALA 65
R +R KWV +VIPDAP+ I ++F++K + IDY+ H P G D Y
Sbjct: 86 RYESLRHCKWVDEVIPDAPWVINQEFLDK----HRIDYVAHDALPYADTSGAANDVYEFV 141
Query: 66 KKVGRFKQIKRTEGVSTTDIV 86
K VG+FK+ KRTEGVST+DI+
Sbjct: 142 KAVGKFKETKRTEGVSTSDII 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.145 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,231,069
Number of extensions: 120127
Number of successful extensions: 324
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 6
Length of query: 97
Length of database: 17,035,801
Length adjustment: 66
Effective length of query: 31
Effective length of database: 13,589,677
Effective search space: 421279987
Effective search space used: 421279987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)