Os10g0578900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CTP:phosphorylcholine cytidylyltransferase (EC 2.7.7.15).
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Os10g0578900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CTP:phosphorylcholine cytidylyltransferase (EC 2.7.7.15).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.19 | 0.302 | 10.5 | -1.79 | 0.828 | -1.57 | 0.269 | -0.327 | -0.066 | 2.27 | 21.01 | 261 | -- | -- |
| 41.24 | 0.299 | 10.5 | -1.8 | 0.824 | -1.46 | 0.244 | -- | -0.0691 | 2.27 | 21.08 | 264 | -- | -- |
| 41.44 | 0.3 | 10.5 | -1.81 | 0.824 | -1.52 | -- | -0.157 | -0.0675 | 2.26 | 21 | 263 | -- | -- |
| 41.45 | 0.3 | 10.5 | -1.81 | 0.824 | -1.48 | -- | -- | -0.0693 | 2.26 | 21.02 | 263 | -- | -- |
| 74.4 | 0.402 | 10.5 | -1.84 | -- | -1.04 | -- | 0.425 | -0.108 | -- | 22.72 | 924 | -- | -- |
| 56.85 | 0.353 | 10.5 | -1.52 | 0.741 | -- | 0.338 | -- | 0.0569 | 2.13 | -- | -- | -- | -- |
| 57.28 | 0.354 | 10.5 | -1.53 | 0.742 | -- | -- | -- | 0.0549 | 2.12 | -- | -- | -- | -- |
| 74.64 | 0.402 | 10.5 | -1.8 | -- | -1.13 | -- | -- | -0.101 | -- | 22.6 | 931 | -- | -- |
| 116.77 | 0.506 | 10.5 | -- | 0.752 | -0.454 | -- | -- | 0.196 | 2.02 | 21.02 | 263 | -- | -- |
| 90.21 | 0.444 | 10.5 | -1.49 | -- | -- | -- | -- | 0.0726 | -- | -- | -- | -- | -- |
| 118.61 | 0.509 | 10.5 | -- | 0.713 | -- | -- | -- | 0.225 | 2.07 | -- | -- | -- | -- |
| 135.96 | 0.543 | 10.4 | -- | -- | 0.859 | -- | -- | 0.344 | -- | 32.6 | 8 | -- | -- |
| 149.12 | 0.57 | 10.5 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.05 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 14 |
| 11 | 40.69 | temperature | 20 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 15 | 40.89 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 16 |
| 24 | 41.03 | temperature | 20 | 720 | > th | dose independent | sin | 19 | NA |
| 25 | 41.03 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 21 |
| 31 | 41.06 | temperature | 20 | 270 | < th | dose dependent | sin | 10 | NA |
| 37 | 41.14 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 22 |
| 38 | 41.15 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 43 | 41.22 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 23 |
| 44 | 41.24 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 12 |
| 57 | 41.37 | temperature | 20 | 720 | < th | dose independent | sin | 18 | NA |
| 58 | 41.38 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 5 |
| 83 | 41.61 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 101 | 41.75 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 109 | 41.80 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 111 | 41.85 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 123 | 41.96 | humidity | 90 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 145 | 42.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 167 | 42.19 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 176 | 42.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 193 | 42.32 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 20 |
| 196 | 42.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 207 | 42.39 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 213 | 42.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 217 | 42.42 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 218 | 42.43 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 238 | 42.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 18 |
| 242 | 42.49 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 243 | 42.49 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 253 | 42.52 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 265 | 42.54 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 23 |
| 296 | 42.61 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 319 | 42.65 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 323 | 42.66 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 356 | 42.74 | humidity | 90 | 14400 | > th | dose dependent | sin | 1 | NA |
| 361 | 42.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 19 |
| 372 | 42.77 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 381 | 42.78 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 397 | 42.80 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 409 | 42.83 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 434 | 42.88 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 470 | 42.93 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 510 | 42.97 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 539 | 43.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 549 | 43.03 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 550 | 43.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 557 | 43.03 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 617 | 43.12 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 621 | 43.12 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 632 | 43.14 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 641 | 43.15 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 669 | 43.17 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 697 | 43.20 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 704 | 43.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 751 | 43.26 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 779 | 43.29 | humidity | 90 | 14400 | < th | dose independent | sin | 3 | NA |
| 798 | 43.30 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 813 | 43.32 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 822 | 43.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 840 | 43.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 844 | 43.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 845 | 43.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 846 | 43.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 847 | 43.35 | wind | 9 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 851 | 43.36 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 928 | 43.41 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 939 | 43.42 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 951 | 43.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 990 | 43.48 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |