BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0578900 Os10g0578900|AK073939
(289 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15130.1 | chr4:8637793-8639388 FORWARD LENGTH=305 417 e-117
AT2G32260.1 | chr2:13697645-13700241 FORWARD LENGTH=333 395 e-110
AT2G38670.1 | chr2:16168979-16171680 FORWARD LENGTH=422 119 1e-27
>AT4G15130.1 | chr4:8637793-8639388 FORWARD LENGTH=305
Length = 304
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 191/241 (79%), Positives = 220/241 (91%), Gaps = 1/241 (0%)
Query: 35 RPVRVYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYE 94
RPVRVYADGIFDLFHFGHARA+EQAK FPNTYLLVGCCNDE+TN++KGKTVMT+ ERYE
Sbjct: 19 RPVRVYADGIFDLFHFGHARAIEQAKKSFPNTYLLVGCCNDEITNKFKGKTVMTESERYE 78
Query: 95 SLRHCKWVDEVIPDAPWVLTQEFIDKHQIDYVAHDALPYADTSGAANDVYEFVKKIGKFK 154
SLRHCKWVDEVIPDAPWVLT EF+DKH+IDYVAHDALPYADTSGA NDVYEFVK IGKFK
Sbjct: 79 SLRHCKWVDEVIPDAPWVLTTEFLDKHKIDYVAHDALPYADTSGAGNDVYEFVKSIGKFK 138
Query: 155 ETKRTDGVSTSDLIMRILKDYNQYVMRNLARGYTRKDLGVSYVKEKQLQVNMKINKLRET 214
ETKRT+G+STSD+IMRI+KDYNQYV+RNL RGY+R++LGVS+ +EK+L+VNM++ KL+E
Sbjct: 139 ETKRTEGISTSDIIMRIVKDYNQYVLRNLDRGYSREELGVSF-EEKRLRVNMRLKKLQEK 197
Query: 215 VKAHQEKLQTVAKTAGINHEEWLANADRWVAGFLEKFEEHCHNMETAIKGRIQEKLRRQT 274
VK QEK+QTVAKTAG++H+EWL NADRWVAGFLE FEE CH M TAI+ IQ++L RQ
Sbjct: 198 VKEQQEKIQTVAKTAGMHHDEWLENADRWVAGFLEMFEEGCHKMGTAIRDGIQQRLMRQE 257
Query: 275 S 275
S
Sbjct: 258 S 258
>AT2G32260.1 | chr2:13697645-13700241 FORWARD LENGTH=333
Length = 332
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 182/244 (74%), Positives = 213/244 (87%), Gaps = 1/244 (0%)
Query: 33 TDRPVRVYADGIFDLFHFGHARALEQAKLLFPN-TYLLVGCCNDELTNRYKGKTVMTQDE 91
TDRPVRVYADGI+DLFHFGHAR+LEQAKL FPN TYLLVGCCNDE T++YKG+TVMT +E
Sbjct: 31 TDRPVRVYADGIYDLFHFGHARSLEQAKLAFPNNTYLLVGCCNDETTHKYKGRTVMTAEE 90
Query: 92 RYESLRHCKWVDEVIPDAPWVLTQEFIDKHQIDYVAHDALPYADTSGAANDVYEFVKKIG 151
RYESLRHCKWVDEVIPDAPWV+ QEF+DKHQIDYVAHD+LPYAD+SGA DVYEFVKK+G
Sbjct: 91 RYESLRHCKWVDEVIPDAPWVVNQEFLDKHQIDYVAHDSLPYADSSGAGKDVYEFVKKVG 150
Query: 152 KFKETKRTDGVSTSDLIMRILKDYNQYVMRNLARGYTRKDLGVSYVKEKQLQVNMKINKL 211
+FKET+RT+G+STSD+IMRI+KDYNQYVMRNL RGY+R+DLGVS+VKEK+L+VNM++ KL
Sbjct: 151 RFKETQRTEGISTSDIIMRIVKDYNQYVMRNLDRGYSREDLGVSFVKEKRLRVNMRLKKL 210
Query: 212 RETVKAHQEKLQTVAKTAGINHEEWLANADRWVAGFLEKFEEHCHNMETAIKGRIQEKLR 271
+E VK QE++ +T + EW+ NADRWVAGFLE FEE CH M TAI IQE+L
Sbjct: 211 QERVKEQQERVGEKIQTVKMLRNEWVENADRWVAGFLEIFEEGCHKMGTAIVDSIQERLM 270
Query: 272 RQTS 275
RQ S
Sbjct: 271 RQKS 274
>AT2G38670.1 | chr2:16168979-16171680 FORWARD LENGTH=422
Length = 421
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 8/142 (5%)
Query: 35 RPVRVYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYE 94
+PVRVY DG FD+ H+GH AL QA+ L L+VG +DE KG V ER
Sbjct: 53 KPVRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDEEIIANKGPPVTPLHERMT 110
Query: 95 SLRHCKWVDEVIPDAPWVLTQEFI----DKHQIDYVAHDALPYADTSGAANDVYEFVKKI 150
++ KWVDEVI DAP+ +T++F+ D++QIDY+ H P G D Y KK
Sbjct: 111 MVKAVKWVDEVISDAPYAITEDFMKKLFDEYQIDYIIHGDDPCVLPDG--TDAYALAKKA 168
Query: 151 GKFKETKRTDGVSTSDLIMRIL 172
G++K+ KRT+GVS++D++ R+L
Sbjct: 169 GRYKQIKRTEGVSSTDIVGRML 190
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 5/155 (3%)
Query: 39 VYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKG--KTVMTQDERYESL 96
+Y DG FDLFH GH L +A+ L +LLVG ND+ + +G + +M ER S+
Sbjct: 257 IYIDGAFDLFHAGHVEILRRAREL--GDFLLVGIHNDQTVSAKRGAHRPIMNLHERSLSV 314
Query: 97 RHCKWVDEVIPDAPWVLTQEFIDKHQIDYVAHDALPYADTSGAAND-VYEFVKKIGKFKE 155
C++VDEVI APW ++++ I I V H + +D D Y +G F+
Sbjct: 315 LACRYVDEVIIGAPWEVSRDTITTFDISLVVHGTVAESDDFRKEEDNPYSVPISMGIFQV 374
Query: 156 TKRTDGVSTSDLIMRILKDYNQYVMRNLARGYTRK 190
++TS +I RI+ ++ Y RN + + K
Sbjct: 375 LDSPLDITTSTIIRRIVANHEAYQKRNAKKEASEK 409
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,694,822
Number of extensions: 223964
Number of successful extensions: 657
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 651
Number of HSP's successfully gapped: 4
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)