BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0578900 Os10g0578900|AK073939
(289 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0578900 Similar to CTP:phosphorylcholine cytidylyltran... 580 e-166
Os08g0161800 Similar to Cholinephosphate cytidylyltransferase 432 e-121
Os02g0173500 Similar to Cholinephosphate cytidylyltransferase 409 e-114
Os10g0387000 Similar to Choline phosphate cytidylyltransfer... 133 1e-31
Os12g0121300 Similar to Phosphoethanolamine cytidylyltransf... 112 5e-25
Os11g0123400 Cytidylyltransferase domain containing protein 71 9e-13
>Os10g0578900 Similar to CTP:phosphorylcholine cytidylyltransferase (EC 2.7.7.15)
Length = 289
Score = 580 bits (1494), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/289 (95%), Positives = 277/289 (95%)
Query: 1 MARVSHSRKRTRAPSNSNXXXXXXXXXXXXELTDRPVRVYADGIFDLFHFGHARALEQAK 60
MARVSHSRKRTRAPSNSN ELTDRPVRVYADGIFDLFHFGHARALEQAK
Sbjct: 1 MARVSHSRKRTRAPSNSNSKPTSQTQPPPPELTDRPVRVYADGIFDLFHFGHARALEQAK 60
Query: 61 LLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYESLRHCKWVDEVIPDAPWVLTQEFIDK 120
LLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYESLRHCKWVDEVIPDAPWVLTQEFIDK
Sbjct: 61 LLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYESLRHCKWVDEVIPDAPWVLTQEFIDK 120
Query: 121 HQIDYVAHDALPYADTSGAANDVYEFVKKIGKFKETKRTDGVSTSDLIMRILKDYNQYVM 180
HQIDYVAHDALPYADTSGAANDVYEFVKKIGKFKETKRTDGVSTSDLIMRILKDYNQYVM
Sbjct: 121 HQIDYVAHDALPYADTSGAANDVYEFVKKIGKFKETKRTDGVSTSDLIMRILKDYNQYVM 180
Query: 181 RNLARGYTRKDLGVSYVKEKQLQVNMKINKLRETVKAHQEKLQTVAKTAGINHEEWLANA 240
RNLARGYTRKDLGVSYVKEKQLQVNMKINKLRETVKAHQEKLQTVAKTAGINHEEWLANA
Sbjct: 181 RNLARGYTRKDLGVSYVKEKQLQVNMKINKLRETVKAHQEKLQTVAKTAGINHEEWLANA 240
Query: 241 DRWVAGFLEKFEEHCHNMETAIKGRIQEKLRRQTSRGIIGGLMQQPVAA 289
DRWVAGFLEKFEEHCHNMETAIKGRIQEKLRRQTSRGIIGGLMQQPVAA
Sbjct: 241 DRWVAGFLEKFEEHCHNMETAIKGRIQEKLRRQTSRGIIGGLMQQPVAA 289
>Os08g0161800 Similar to Cholinephosphate cytidylyltransferase
Length = 281
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/240 (82%), Positives = 218/240 (90%)
Query: 35 RPVRVYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYE 94
RPVRVYADGI+DLFHFGHARALEQAK FPNTYLLVGCC+DE+TN YKGKTVMT+DERYE
Sbjct: 29 RPVRVYADGIYDLFHFGHARALEQAKKSFPNTYLLVGCCSDEITNLYKGKTVMTEDERYE 88
Query: 95 SLRHCKWVDEVIPDAPWVLTQEFIDKHQIDYVAHDALPYADTSGAANDVYEFVKKIGKFK 154
SLRHCKWVDEVIPDAPWV+ QEF+DKH+IDYVAHDALPYADTSGAANDVYEFVK +GKFK
Sbjct: 89 SLRHCKWVDEVIPDAPWVINQEFLDKHRIDYVAHDALPYADTSGAANDVYEFVKAVGKFK 148
Query: 155 ETKRTDGVSTSDLIMRILKDYNQYVMRNLARGYTRKDLGVSYVKEKQLQVNMKINKLRET 214
ETKRT+GVSTSD+IMRILKDYNQY+MRNL RGY+RKDLGVSYVKEKQL+VNM I+KLRE
Sbjct: 149 ETKRTEGVSTSDIIMRILKDYNQYIMRNLTRGYSRKDLGVSYVKEKQLRVNMGISKLREK 208
Query: 215 VKAHQEKLQTVAKTAGINHEEWLANADRWVAGFLEKFEEHCHNMETAIKGRIQEKLRRQT 274
VK HQEK + AK AG N EW+ NADRW+ GFLEKFEE CH METAIK RIQE L+RQ+
Sbjct: 209 VKEHQEKFHSAAKIAGSNPVEWMENADRWIVGFLEKFEEGCHMMETAIKDRIQEGLKRQS 268
>Os02g0173500 Similar to Cholinephosphate cytidylyltransferase
Length = 315
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 186/240 (77%), Positives = 216/240 (90%)
Query: 35 RPVRVYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYE 94
RP+RVYADGI+DLFHFGHA++LEQAK LFPNTYLLVGCCNDELT++YKG+TVMT+DERYE
Sbjct: 51 RPIRVYADGIYDLFHFGHAKSLEQAKRLFPNTYLLVGCCNDELTHKYKGRTVMTEDERYE 110
Query: 95 SLRHCKWVDEVIPDAPWVLTQEFIDKHQIDYVAHDALPYADTSGAANDVYEFVKKIGKFK 154
SLRHCKWVDEVIPDAPWV+T+EF++KH ID+VAHD+LPYAD SGA NDVYEFVKK+GKFK
Sbjct: 111 SLRHCKWVDEVIPDAPWVVTEEFLNKHNIDFVAHDSLPYADASGAGNDVYEFVKKLGKFK 170
Query: 155 ETKRTDGVSTSDLIMRILKDYNQYVMRNLARGYTRKDLGVSYVKEKQLQVNMKINKLRET 214
ET+RTDG+STSD+IMRI+KDYN+YVMRNLARGYTRKDLGVSYVKEK+L+VNM + LR+
Sbjct: 171 ETQRTDGISTSDIIMRIVKDYNEYVMRNLARGYTRKDLGVSYVKEKRLRVNMGLKNLRDK 230
Query: 215 VKAHQEKLQTVAKTAGINHEEWLANADRWVAGFLEKFEEHCHNMETAIKGRIQEKLRRQT 274
VK HQEK+ T EEW+ NADRWVAGFLEKFEE CH+M TAIK RIQE+L+ Q+
Sbjct: 231 VKQHQEKVGEKWNTMAKLQEEWVENADRWVAGFLEKFEEGCHSMGTAIKERIQERLKAQS 290
>Os10g0387000 Similar to Choline phosphate cytidylyltransferase-like protein
(Fragment)
Length = 425
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 94/147 (63%), Gaps = 8/147 (5%)
Query: 35 RPVRVYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYE 94
RPVRVY DG FDL H+GHA AL QAKLL L+VG +DE KG V++ +ER
Sbjct: 69 RPVRVYMDGCFDLMHYGHANALRQAKLL--GDQLVVGVVSDEEIVANKGPPVLSMEERLT 126
Query: 95 SLRHCKWVDEVIPDAPWVLTQEFI----DKHQIDYVAHDALPYADTSGAANDVYEFVKKI 150
+ KWVDEVIP+AP+ +T+EF+ +K+ IDY+ H P G D Y KK+
Sbjct: 127 LVSGLKWVDEVIPNAPYEITEEFMNTLFNKYNIDYIIHGDDPCLLPDG--TDAYALAKKV 184
Query: 151 GKFKETKRTDGVSTSDLIMRILKDYNQ 177
G++K+ KRT+GVS++D++ RIL + Q
Sbjct: 185 GRYKQIKRTEGVSSTDIVGRILLTFKQ 211
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 39 VYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKG-KTVMTQDERYESLR 97
VY DG FDLFH GH L A+ L +LLVG +D+ +G + +M ER S+
Sbjct: 264 VYIDGAFDLFHAGHVEILRSARQL--GDFLLVGVHDDQAIRDRRGYRPIMHLHERTLSVL 321
Query: 98 HCKWVDEVIPDAPWVLTQEFIDKHQIDYVAHDALPYADTSGAANDVYEFVKKIGKFKETK 157
C++VDEVI APW ++++ I I V H + +S D Y K +G F+
Sbjct: 322 ACRYVDEVIIGAPWEVSRDMITTFNISLVVHGTVT-EGSSVVGIDSYAVPKSMGIFQTIT 380
Query: 158 RTDGVSTSDLIMRILKDYNQYVMRNLAR 185
T ++T + RI+ ++ Y RNL +
Sbjct: 381 STKPITTVSVATRIIDNHEAYKKRNLKK 408
>Os12g0121300 Similar to Phosphoethanolamine cytidylyltransferase
Length = 424
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 8/138 (5%)
Query: 39 VYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKGKTVMTQDERYESLRH 98
VY DG FD+ H+GH AL QA L L+VG +D+ KG V ER +R
Sbjct: 61 VYMDGCFDMMHYGHCNALRQAHAL--GDELIVGVVSDDEITANKGPPVTPLHERLIMVRA 118
Query: 99 CKWVDEVIPDAPWVLTQEFIDK----HQIDYVAHDALPYADTSGAANDVYEFVKKIGKFK 154
KWV +VIPDAP+ +T++F++K + IDY+ H P G D Y KK+G++K
Sbjct: 119 VKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDG--TDAYALAKKVGRYK 176
Query: 155 ETKRTDGVSTSDLIMRIL 172
+ KRT+GVST+D++ R+L
Sbjct: 177 QIKRTEGVSTTDIVGRML 194
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 39 VYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKG--KTVMTQDERYESL 96
VY DG FDLFH GH L A+ L +LLVG D+ + +G + +M ER S+
Sbjct: 260 VYIDGAFDLFHAGHVEILRLAREL--GDFLLVGIHTDQTISSTRGPHRPIMNLHERSLSV 317
Query: 97 RHCKWVDEVIPDAPWVLTQEFIDKHQIDYVAHDALPYADTSGAAND---VYEFVKKIGKF 153
C++VDEVI APW ++++ I I V H + A+ D Y + +G +
Sbjct: 318 LACRYVDEVIIGAPWDVSKDMITTFNISLVVHGTI--AENMDFMKDDLNPYAVPRAMGIY 375
Query: 154 KETKRTDGVSTSDLIMRILKDYNQYVMRN 182
+ + ++TS +I RI+ ++ Y RN
Sbjct: 376 RRLESPLDITTSTIIRRIVANHEAYQKRN 404
>Os11g0123400 Cytidylyltransferase domain containing protein
Length = 97
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 92 RYESLRHCKWVDEVIPDAPWVLTQEFIDK----HQIDYVAHDALPYADTSGAANDVYEFV 147
R +R KWV +VIPDAP+ +T++F++K + IDY+ H P G D Y
Sbjct: 8 RLIMVRAVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDG--TDAYALA 65
Query: 148 KKIGKFKETKRTDGVSTSDLI 168
KK+G+FK+ KRT+GVST+D++
Sbjct: 66 KKVGRFKQIKRTEGVSTTDIV 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,594,882
Number of extensions: 322960
Number of successful extensions: 831
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 823
Number of HSP's successfully gapped: 8
Length of query: 289
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 189
Effective length of database: 11,814,401
Effective search space: 2232921789
Effective search space used: 2232921789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)