BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0109200 Os11g0109200|Os11g0109200
(473 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0109200 C-5 cytosine-specific DNA methylase family pro... 907 0.0
Os12g0108900 UBA-like domain containing protein 422 e-118
Os03g0110800 Similar to DNA methyltransferase 373 e-103
Os05g0133900 Similar to Shaggy-related protein kinase eta (... 129 7e-30
Os05g0313900 Protein prenyltransferase domain containing pr... 121 1e-27
>Os11g0109200 C-5 cytosine-specific DNA methylase family protein
Length = 473
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/473 (93%), Positives = 441/473 (93%)
Query: 1 MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLT 60
MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLT
Sbjct: 1 MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLT 60
Query: 61 YQAIGSDPSVGNSSHSACDPQILXXXXXXXXXXXXXXXXXXXFDRATYSDGSGDEDFLQE 120
YQAIGSDPSVGNSSHSACDPQIL FDRATYSDGSGDEDFLQE
Sbjct: 61 YQAIGSDPSVGNSSHSACDPQILEEEDEEEDVNWDEDDTVDNFDRATYSDGSGDEDFLQE 120
Query: 121 MSEKDEKIKSLVSMGFPEDEDTEFSSFGGRKKTKLIDGSKKKRERYRSRPQWNQVPFDGS 180
MSEKDEKIKSLVSMGFPEDEDTEFSSFGGRKKTKLIDGSKKKRERYRSRPQWNQVPFDGS
Sbjct: 121 MSEKDEKIKSLVSMGFPEDEDTEFSSFGGRKKTKLIDGSKKKRERYRSRPQWNQVPFDGS 180
Query: 181 HEEPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFFYYENVALAPKGVWTTISRFLYD 240
HEEPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFFYYENVALAPKGVWTTISRFLYD
Sbjct: 181 HEEPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFFYYENVALAPKGVWTTISRFLYD 240
Query: 241 IYPEFVYSKYFCAAARKRGYIHNLPIKNRNYTRGVSRTARYRALGNSFQVDTVAYHLSVL 300
IYPEFVYSKYFCAAARKRGYIHNLPIKNRNYTRGVSRTARYRALGNSFQVDTVAYHLSVL
Sbjct: 241 IYPEFVYSKYFCAAARKRGYIHNLPIKNRNYTRGVSRTARYRALGNSFQVDTVAYHLSVL 300
Query: 301 RDIFPNGMNVLSLFSGIGGAEVALHRLGICMKTVVLVEISEVNMTLLRSWWDQTQTGTLI 360
RDIFPNGMNVLSLFSGIGGAEVALHRLGICMKTVVLVEISEVNMTLLRSWWDQTQTGTLI
Sbjct: 301 RDIFPNGMNVLSLFSGIGGAEVALHRLGICMKTVVLVEISEVNMTLLRSWWDQTQTGTLI 360
Query: 361 EIADVQNLTAERIELFIRRFGGFDLVIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRI 420
EIADVQNLTAERIELFIRRFGGFDLVIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRI
Sbjct: 361 EIADVQNLTAERIELFIRRFGGFDLVIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRI 420
Query: 421 LDSVKTIMASIFGAKGKLFRHVRKAXXXXXXXXXXXXXEQDPSNNSDKDSMDK 473
LDSVKTIMASIFGAKGKLFRHVRKA EQDPSNNSDKDSMDK
Sbjct: 421 LDSVKTIMASIFGAKGKLFRHVRKALLLKQSSSLTLKTEQDPSNNSDKDSMDK 473
>Os12g0108900 UBA-like domain containing protein
Length = 437
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/328 (68%), Positives = 229/328 (69%), Gaps = 77/328 (23%)
Query: 1 MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIG------------- 47
MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIG
Sbjct: 1 MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGNDNNNTFPHLLQL 60
Query: 48 ------DTDSEQILELLLTYQAIGSDPSVGNSSHSACDPQILXXXXXXXXXXXXXXXXXX 101
DTDSEQILELLLTYQ IL
Sbjct: 61 LPFLSGDTDSEQILELLLTYQ-------------------ILEEEDEEEDVNWDEDDTVD 101
Query: 102 XFDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPEDE--------------------- 140
FDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPEDE
Sbjct: 102 NFDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPEDEAMRAITRCGLDASVDLLVESI 161
Query: 141 ------------------DTEFSSFGGRKKTKLIDGSKKKRERYRSRPQWNQVPFDGSHE 182
DTEFSSFGGRKKTKLIDG+KKKRERYRSRPQWNQVPFDGSHE
Sbjct: 162 YAPASAGNVYFTNLSDYEDTEFSSFGGRKKTKLIDGTKKKRERYRSRPQWNQVPFDGSHE 221
Query: 183 EPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFFYYENVALAPKGVWTTISRFLYDIY 242
EPMPLPN MVGFSLPNDGLRSVHRNLPD ALGPPFFYYENVALAPKGVWTTISRFLYDIY
Sbjct: 222 EPMPLPNPMVGFSLPNDGLRSVHRNLPDHALGPPFFYYENVALAPKGVWTTISRFLYDIY 281
Query: 243 PEFVYSKYFCAAARKRGYIHNLPIKNRN 270
PEFV SKYFCAAARKRGYIHNLPI+NR+
Sbjct: 282 PEFVDSKYFCAAARKRGYIHNLPIENRS 309
>Os03g0110800 Similar to DNA methyltransferase
Length = 597
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/303 (66%), Positives = 217/303 (71%), Gaps = 41/303 (13%)
Query: 6 SSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLTYQAIG 65
S+ + DANGKANGS ALVA F+GMGF +EM+ +AIKEIGDTD+EQ+LELLLTYQAIG
Sbjct: 38 STRLPQDANGKANGSG--ALVAEFMGMGFPKEMILKAIKEIGDTDTEQLLELLLTYQAIG 95
Query: 66 SDPSVGNSSHSACDPQILXXXXXXXXXXXXXXXXXXXFDRATYSDGSGDEDFLQEMSEKD 125
D SVGN S SAC PQ L DR +SDGSGDEDF QEMSEKD
Sbjct: 96 GDASVGNCSASACAPQTLEVDEEEDDTNWDEYDTAGNCDRTPHSDGSGDEDFFQEMSEKD 155
Query: 126 EKIKSLVSMGFPEDE--------------------------------------DTEFSSF 147
EK+KSLV+MGFPEDE DTEFSSF
Sbjct: 156 EKMKSLVNMGFPEDEAKMAIDRCLDAPVAVLVDSIYASQEAGNGYSANLSDYEDTEFSSF 215
Query: 148 GGRKKTKLIDGSKKKRERYRSRPQWNQVPFDGSHEEPMPLPNSMVGFSLPNDGLRSVHRN 207
GGRKKT+ +DGSKK R+RY S P NQVPFDGSHEEPMPLPN MVGFSLPN+ LRSVHRN
Sbjct: 216 GGRKKTRFVDGSKK-RKRYGSGPSGNQVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHRN 274
Query: 208 LPDQALGPPFFYYENVALAPKGVWTTISRFLYDIYPEFVYSKYFCAAARKRGYIHNLPIK 267
LPDQALGPPFFYYENVALAPKGVWTTISRFLYDI PEFV SKYFCAAARKRGYIHNLPI+
Sbjct: 275 LPDQALGPPFFYYENVALAPKGVWTTISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPIE 334
Query: 268 NRN 270
NR+
Sbjct: 335 NRS 337
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 138/163 (84%), Positives = 151/163 (92%)
Query: 269 RNYTRGVSRTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLG 328
RN+TRGVSRT RYRALGNSFQVDTVAYHLSVLRD+FPNGMNVLSLFSGIGGAEVALHRLG
Sbjct: 435 RNHTRGVSRTERYRALGNSFQVDTVAYHLSVLRDLFPNGMNVLSLFSGIGGAEVALHRLG 494
Query: 329 ICMKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADVQNLTAERIELFIRRFGGFDLVIG 388
I MKTV+ VE SEVN T+L+SWWDQTQTGTLIEIADV++LT ERIE FIRRFGGFDLVIG
Sbjct: 495 IHMKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADVRHLTTERIETFIRRFGGFDLVIG 554
Query: 389 GSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMASI 431
GSPCNNLAGSNR+HRDGLEG+HSALFY Y RIL+ VK M+++
Sbjct: 555 GSPCNNLAGSNRHHRDGLEGEHSALFYDYIRILEHVKATMSAV 597
>Os05g0133900 Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta)
(BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1)
Length = 667
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 4/159 (2%)
Query: 274 GVSRTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLGICMKT 333
G++ R A+ SFQ DT+ Y LSVL+D++P+G+ VLS++SGIGGA +ALHRLGI ++
Sbjct: 508 GLNPQDRIEAMRYSFQTDTLGYLLSVLKDLYPDGLRVLSIYSGIGGAAIALHRLGIPLQC 567
Query: 334 VVLVEISEVNMTLLRSWWDQT-QTGTLIEIADVQNLTAERIELFIRRFGGFDLVIGGSPC 392
VV V+ S+ N +LR WW T Q G L +I + L +E ++ FGGFD++IGG+
Sbjct: 568 VVSVDQSDTNRKILRRWWSNTEQKGQLRQINTIWKLKINVLEDLVKEFGGFDIIIGGNFS 627
Query: 393 NNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMASI 431
+ G+ G++ S F+ Y R++ VK IM +
Sbjct: 628 SCKGGTTVNSSMGMD---SNQFFEYVRVVQRVKHIMGRL 663
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 33/282 (11%)
Query: 16 KANGSAPSALVAYFLG-MGFSREMVFRAIKEIGDTDS-EQILELLLTYQAIGSD--PSVG 71
K + S +Y L M FS+ V A+ ++G+ S EQ+++ ++T Q G G
Sbjct: 125 KVEADSSSEKRSYLLSTMNFSQREVDLALNQLGEEASLEQLVDFIVTGQVSGCSGGNENG 184
Query: 72 NSSHSACDPQ---ILXXXXXXXXXXXXXXXXXXXFDRATYSDGS---GDEDFLQEMSEKD 125
++S+ D ++ D+A D F + ++
Sbjct: 185 DASNEVKDESLFGVMDKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRIASSI 244
Query: 126 EKIKSLVSMGFPEDEDTEFSSFG------------------GRKKTKLIDGSKKKRERYR 167
E+ + V F ++ +T +S++ R K ID S R
Sbjct: 245 EQKEVKVEPDFLDETETSYSAYHPSNSGLRYYDDDHDNIRIKRAKHMFIDDSAGSSSRAG 304
Query: 168 SRPQWNQVPFDGSHEEPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFFYYENVALAP 227
++P N P+ H + F G+R RN+ PP+F Y NV P
Sbjct: 305 NQP--NLDPWLKDHRATTSDGSVKEEFDAMTPGIR---RNVRSDVANPPYFLYGNVVEIP 359
Query: 228 KGVWTTISRFLYDIYPEFVYSKYFCAAARKRGYIHNLPIKNR 269
K W +S FLY++ PEFV S++F A +RK GYIHNLP + R
Sbjct: 360 KATWRQLSEFLYNVEPEFVNSQFFSALSRKEGYIHNLPTEGR 401
>Os05g0313900 Protein prenyltransferase domain containing protein
Length = 1070
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 91/176 (51%), Gaps = 60/176 (34%)
Query: 116 DFLQEMSEKDEKIKSLVSMGFPEDE--------------------DTEFSSFGGRKKTKL 155
DFLQE+SE DEKIKSLVSMGFPEDE D EFSSFGGRK T+
Sbjct: 886 DFLQELSENDEKIKSLVSMGFPEDEAKTAITRCGNVYSANLSDYEDAEFSSFGGRKNTRF 945
Query: 156 IDGSKKKRERYRSRPQWNQVPFDGSHEEPMPLPNSMVGFSLPNDGLRS-VHRNLPDQALG 214
+DGSKKK G + + G++ + + Q L
Sbjct: 946 MDGSKKKS-----------------------------GMEVGHKGIKCHLVTAMKSQCLC 976
Query: 215 PPFFYYENVALAPKGVWTTISRFLYDIYPEFVYSKYFCAAARKRGYIHNLPIKNRN 270
++ GVWTTISRFL+DI PEFV S FCAAARK YIHNLPI+NR+
Sbjct: 977 QILWWI--------GVWTTISRFLFDIQPEFVGS--FCAAARKMDYIHNLPIENRS 1022
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,706,288
Number of extensions: 676130
Number of successful extensions: 1319
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1311
Number of HSP's successfully gapped: 9
Length of query: 473
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 368
Effective length of database: 11,553,331
Effective search space: 4251625808
Effective search space used: 4251625808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)