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Os03g0110800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA methyltransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0101) R2 : 0.605
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.635 (0.0243) R2dC : 0.593 R2C : 0.585
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0877 (0.0211) R2dN8 : 0.0192 R2N8 : 0.0117
σ : 0.19
deviance : 16.43
__
_____
C
peak time of C : 10.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.11 0.163 10.6 -0.0941 0.617 -0.418 -0.523 -0.194 0.0351 10.3 49.28 4906 -- --
12.12 0.162 10.6 -0.0763 0.621 -0.486 -0.528 -- 0.0308 10.2 49.03 4905 -- --
13.18 0.169 10.6 -0.117 0.619 -0.408 -- -0.17 0.0304 10.2 49.3 4855 -- --
13.19 0.169 10.6 -0.115 0.622 -0.458 -- -- 0.0319 10.2 49.99 4855 -- --
36.28 0.281 10.6 -0.086 -- -0.404 -- -0.0597 0.0265 -- 49 3850 -- --
14.18 0.177 10.6 -0.213 0.631 -- -0.455 -- 0.0631 10.3 -- -- -- --
15.01 0.181 10.6 -0.232 0.633 -- -- -- 0.0619 10.2 -- -- -- --
36.25 0.28 10.6 -0.0811 -- -0.422 -- -- 0.0205 -- 50 3850 -- --
13.48 0.171 10.6 -- 0.619 -0.53 -- -- 0.0368 10.3 50 4833 -- --
39.4 0.293 10.6 -0.241 -- -- -- -- 0.0604 -- -- -- -- --
16.43 0.19 10.6 -- 0.635 -- -- -- 0.0877 10.3 -- -- -- --
36.41 0.281 10.6 -- -- -0.462 -- -- 0.0266 -- 49 3850 -- --
40.93 0.299 10.6 -- -- -- -- -- 0.0872 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.99 temperature 10.0 90 > th dose dependent rect. 6 19
2 11.07 temperature 10.0 10 > th dose dependent rect. 7 18
4 11.10 atmosphere 1000.0 270 > th dose independent rect. 23 5
5 11.12 atmosphere 1000.0 270 > th dose independent rect. 1 2
8 11.15 atmosphere 995.0 270 > th dose dependent rect. 24 4
9 11.16 atmosphere 995.0 270 > th dose dependent rect. 1 2
17 11.27 atmosphere 1000.0 10 > th dose independent rect. 1 6
20 11.29 wind 7.0 270 < th dose independent rect. 1 2
22 11.30 precipitation 0.1 270 < th dose independent rect. 1 2
23 11.30 precipitation 0.1 270 < th dose dependent rect. 1 2
25 11.31 temperature 10.0 270 > th dose independent rect. 1 2
27 11.31 temperature 30.0 270 < th dose independent rect. 1 2
28 11.31 humidity 50.0 270 > th dose independent rect. 1 2
32 11.31 atmosphere 1010.0 270 < th dose independent rect. 1 2
34 11.31 radiation 1.0 270 < th dose independent rect. 1 2
39 11.31 wind 1.0 270 > th dose independent rect. 23 5
40 11.31 precipitation 0.1 270 < th dose independent rect. 23 5
42 11.31 temperature 10.0 270 > th dose independent rect. 3 22
43 11.31 radiation 1.0 270 < th dose dependent rect. 1 2
48 11.31 precipitation 0.1 270 < th dose dependent rect. 23 5
52 11.33 wind 1.0 270 > th dose independent rect. 24 3
65 11.33 wind 7.0 270 < th dose independent rect. 23 5
66 11.33 precipitation 0.1 270 < th dose independent rect. 4 19
73 11.33 precipitation 0.1 270 < th dose dependent rect. 4 19
77 11.34 atmosphere 1015.0 270 < th dose independent rect. 4 19
78 11.34 radiation 20.0 10 < th dose dependent rect. 1 6
81 11.35 temperature 10.0 270 > th dose independent rect. 23 5
82 11.35 temperature 30.0 270 < th dose independent rect. 23 5
83 11.35 humidity 50.0 270 > th dose independent rect. 23 5
87 11.35 radiation 1.0 270 < th dose independent rect. 23 5
92 11.35 temperature 10.0 270 > th dose independent rect. 4 19
94 11.35 radiation 1.0 270 < th dose dependent rect. 23 5
101 11.36 wind 9.0 270 < th dose independent rect. 4 19
102 11.36 wind 9.0 270 < th dose independent rect. 3 21
103 11.36 precipitation 0.1 270 < th dose independent rect. 3 21
106 11.36 precipitation 0.1 270 < th dose dependent rect. 3 21
111 11.37 atmosphere 995.0 10 > th dose dependent rect. 1 6
117 11.39 radiation 40.0 30 < th dose independent rect. 7 18
145 11.40 temperature 10.0 270 > th dose dependent rect. 17 7
175 11.44 atmosphere 1015.0 10 < th dose independent rect. 7 18
192 11.47 precipitation 0.1 10 < th dose independent rect. 7 18
193 11.47 wind 9.0 270 < th dose dependent rect. 1 2
197 11.47 precipitation 0.1 10 < th dose dependent rect. 7 18
199 11.48 humidity 50.0 270 > th dose dependent rect. 1 2
201 11.48 temperature 30.0 90 < th dose dependent rect. 1 4
202 11.48 wind 9.0 10 < th dose dependent rect. 1 6
214 11.50 wind 9.0 90 < th dose dependent rect. 1 4
231 11.51 wind 7.0 10 < th dose independent rect. 1 6
247 11.54 temperature 10.0 10 > th dose independent rect. 1 6
249 11.54 temperature 30.0 10 < th dose independent rect. 1 6
250 11.54 humidity 50.0 10 > th dose independent rect. 1 6
254 11.54 atmosphere 1015.0 10 < th dose independent rect. 1 6
255 11.54 radiation 20.0 10 < th dose independent rect. 1 6
258 11.54 temperature 10.0 10 > th dose independent rect. 7 18
285 11.56 precipitation 0.1 10 < th dose independent rect. 1 6
295 11.56 humidity 50.0 270 > th dose dependent rect. 23 5
296 11.56 precipitation 0.1 10 < th dose dependent rect. 1 6
320 11.58 radiation 40.0 270 < th dose independent rect. 19 14
325 11.59 wind 9.0 1440 < th dose independent rect. 2 6
326 11.59 temperature 10.0 1440 > th dose independent rect. 2 6
329 11.59 temperature 30.0 1440 < th dose independent rect. 2 6
333 11.59 humidity 50.0 1440 > th dose independent rect. 2 6
338 11.59 atmosphere 995.0 1440 > th dose independent rect. 2 6
339 11.59 temperature 10.0 1440 > th dose independent rect. 8 18
346 11.60 wind 9.0 10 < th dose independent rect. 7 18
351 11.61 temperature 10.0 270 > th dose dependent rect. 1 2
371 11.64 humidity 50.0 10 > th dose dependent rect. 1 6
406 11.67 radiation 1.0 90 < th dose dependent rect. 1 17
411 11.68 humidity 50.0 10 > th dose independent rect. 7 18
414 11.69 temperature 15.0 270 > th dose independent rect. 9 10
415 11.69 humidity 50.0 270 > th dose independent rect. 4 19
416 11.69 temperature 15.0 270 > th dose dependent rect. 20 2
417 11.69 temperature 10.0 270 > th dose dependent rect. 24 4
418 11.69 temperature 30.0 270 < th dose dependent rect. 23 5
422 11.70 wind 9.0 270 < th dose independent rect. 19 14
439 11.72 atmosphere 1015.0 270 < th dose independent rect. 9 10
440 11.72 temperature 10.0 270 > th dose independent rect. 19 14
441 11.72 humidity 50.0 270 > th dose independent rect. 19 14
443 11.72 atmosphere 995.0 270 > th dose independent rect. 19 14
444 11.72 radiation 1.0 90 < th dose independent rect. 1 17
466 11.74 wind 9.0 1440 < th dose independent rect. 2 4
467 11.74 temperature 10.0 1440 > th dose independent rect. 2 4
470 11.74 temperature 30.0 1440 < th dose independent rect. 2 4
474 11.74 humidity 50.0 1440 > th dose independent rect. 2 4
483 11.74 atmosphere 995.0 1440 > th dose independent rect. 2 4
484 11.74 radiation 20.0 1440 < th dose independent rect. 2 4
494 11.74 temperature 10.0 1440 > th dose independent rect. 6 20
497 11.74 atmosphere 995.0 90 > th dose independent rect. 5 20
509 11.75 atmosphere 995.0 270 > th dose independent rect. 9 10
510 11.75 temperature 25.0 30 < th dose independent rect. 13 17
577 11.77 temperature 30.0 270 < th dose independent rect. 19 14
602 11.79 radiation 40.0 270 < th dose independent rect. 4 7
654 11.81 atmosphere 995.0 10 > th dose independent rect. 7 18
691 11.82 radiation 10.0 10 < th dose dependent rect. 1 9
703 11.83 precipitation 0.1 270 < th dose independent rect. 9 10
712 11.83 precipitation 0.1 270 < th dose dependent rect. 9 10
718 11.84 wind 1.0 10 > th dose independent rect. 7 18
730 11.84 radiation 1.0 90 < th dose dependent rect. 1 14
735 11.85 wind 9.0 270 < th dose independent rect. 9 10
736 11.85 precipitation 0.1 270 < th dose independent rect. 19 14
738 11.85 temperature 30.0 270 < th dose independent rect. 24 15
747 11.85 precipitation 0.1 270 < th dose dependent rect. 19 14
776 11.86 radiation 40.0 30 < th dose dependent rect. 7 18
797 11.88 wind 1.0 270 > th dose independent rect. 4 19
844 11.89 temperature 15.0 10 > th dose dependent rect. 21 5
847 11.89 temperature 10.0 270 > th dose dependent rect. 19 14
887 11.91 temperature 30.0 270 < th dose independent rect. 24 17
900 11.91 temperature 30.0 10 < th dose dependent rect. 1 6
924 11.92 humidity 60.0 270 > th dose independent rect. 4 7
951 11.93 temperature 10.0 10 > th dose dependent rect. 1 6
953 11.93 humidity 50.0 270 > th dose dependent rect. 4 8
956 11.93 radiation 40.0 270 < th dose dependent rect. 4 20
970 11.94 wind 1.0 270 > th dose independent rect. 9 10