BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0110800 Os03g0110800|AK065147
(597 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0110800 Similar to DNA methyltransferase 1219 0.0
Os12g0108900 UBA-like domain containing protein 593 e-169
Os11g0109200 C-5 cytosine-specific DNA methylase family pro... 363 e-100
Os05g0133900 Similar to Shaggy-related protein kinase eta (... 310 2e-84
Os05g0313900 Protein prenyltransferase domain containing pr... 197 2e-50
>Os03g0110800 Similar to DNA methyltransferase
Length = 597
Score = 1219 bits (3153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/597 (97%), Positives = 584/597 (97%)
Query: 1 MVDWASDSDNDKFEWDTDGEAETSSAPALRNIDAPGPSTRLPQDANGKANGSGALVAEFM 60
MVDWASDSDNDKFEWDTDGEAETSSAPALRNIDAPGPSTRLPQDANGKANGSGALVAEFM
Sbjct: 1 MVDWASDSDNDKFEWDTDGEAETSSAPALRNIDAPGPSTRLPQDANGKANGSGALVAEFM 60
Query: 61 GMGFPKEMILKAIKEIGXXXXXXXXXXXXXYQAIGGDASVGNCSASACAPQTLEVDEEED 120
GMGFPKEMILKAIKEIG YQAIGGDASVGNCSASACAPQTLEVDEEED
Sbjct: 61 GMGFPKEMILKAIKEIGDTDTEQLLELLLTYQAIGGDASVGNCSASACAPQTLEVDEEED 120
Query: 121 DTNWDEYDTAGNCDRTPHSDGSGDEDFFQEMSEKDEKMKSLVNMGFPEDEAKMAIDRCLD 180
DTNWDEYDTAGNCDRTPHSDGSGDEDFFQEMSEKDEKMKSLVNMGFPEDEAKMAIDRCLD
Sbjct: 121 DTNWDEYDTAGNCDRTPHSDGSGDEDFFQEMSEKDEKMKSLVNMGFPEDEAKMAIDRCLD 180
Query: 181 APVAVLVDSIYASQEAGNGYSANLSDYEDTEFSSFGGRKKTRFVDGSKKRKRYGSGPSGN 240
APVAVLVDSIYASQEAGNGYSANLSDYEDTEFSSFGGRKKTRFVDGSKKRKRYGSGPSGN
Sbjct: 181 APVAVLVDSIYASQEAGNGYSANLSDYEDTEFSSFGGRKKTRFVDGSKKRKRYGSGPSGN 240
Query: 241 QVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHRNLPDQALGPPFFYYENVALAPKGVWTT 300
QVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHRNLPDQALGPPFFYYENVALAPKGVWTT
Sbjct: 241 QVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHRNLPDQALGPPFFYYENVALAPKGVWTT 300
Query: 301 ISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPIENRSPVLPMPPKTISEAFPNTKRWWPS 360
ISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPIENRSPVLPMPPKTISEAFPNTKRWWPS
Sbjct: 301 ISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPIENRSPVLPMPPKTISEAFPNTKRWWPS 360
Query: 361 WDPRRQFNCLQTCMASAKLTERIRCALGRFSDVPTPQVQKYVLDECRKWNLVWVGKNKVA 420
WDPRRQFNCLQTCMASAKLTERIRCALGRFSDVPTPQVQKYVLDECRKWNLVWVGKNKVA
Sbjct: 361 WDPRRQFNCLQTCMASAKLTERIRCALGRFSDVPTPQVQKYVLDECRKWNLVWVGKNKVA 420
Query: 421 PLEPDEMEFLLGYPRNHTRGVSRTERYRALGNSFQVDTVAYHLSVLRDLFPNGMNVLSLF 480
PLEPDEMEFLLGYPRNHTRGVSRTERYRALGNSFQVDTVAYHLSVLRDLFPNGMNVLSLF
Sbjct: 421 PLEPDEMEFLLGYPRNHTRGVSRTERYRALGNSFQVDTVAYHLSVLRDLFPNGMNVLSLF 480
Query: 481 SGIGGAEVALHRLGIHMKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADVRHLTTERIE 540
SGIGGAEVALHRLGIHMKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADVRHLTTERIE
Sbjct: 481 SGIGGAEVALHRLGIHMKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADVRHLTTERIE 540
Query: 541 TFIRRFGGFDLVIGGSPCNNLAGSNRHHRDGLEGEHSALFYDYIRILEHVKATMSAV 597
TFIRRFGGFDLVIGGSPCNNLAGSNRHHRDGLEGEHSALFYDYIRILEHVKATMSAV
Sbjct: 541 TFIRRFGGFDLVIGGSPCNNLAGSNRHHRDGLEGEHSALFYDYIRILEHVKATMSAV 597
>Os12g0108900 UBA-like domain containing protein
Length = 437
Score = 593 bits (1528), Expect = e-169, Method: Compositional matrix adjust.
Identities = 308/418 (73%), Positives = 332/418 (79%), Gaps = 4/418 (0%)
Query: 38 STRLPQDANGKANGSG--ALVAEFMGMGFPKEMILKAIKEIGXXXXXXXXXXXXXYQAIG 95
S+ + DANGKANGS ALVA F+GMGF +EM+ +AIKEIG +
Sbjct: 6 SSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGNDNNNTFPHLLQLLPFLS 65
Query: 96 GDASVGNCSASACAPQTLEVDEEEDDTNWDEYDTAGNCDRTPHSDGSGDEDFFQEMSEKD 155
GD Q LE ++EE+D NWDE DT N DR +SDGSGDEDF QEMSEKD
Sbjct: 66 GDTDSEQILELLLTYQILEEEDEEEDVNWDEDDTVDNFDRATYSDGSGDEDFLQEMSEKD 125
Query: 156 EKMKSLVNMGFPEDEAKMAIDRC-LDAPVAVLVDSIYASQEAGNGYSANLSDYEDTEFSS 214
EK+KSLV+MGFPEDEA AI RC LDA V +LV+SIYA AGN Y NLSDYEDTEFSS
Sbjct: 126 EKIKSLVSMGFPEDEAMRAITRCGLDASVDLLVESIYAPASAGNVYFTNLSDYEDTEFSS 185
Query: 215 FGGRKKTRFVDGSKK-RKRYGSGPSGNQVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHR 273
FGGRKKT+ +DG+KK R+RY S P NQVPFDGSHEEPMPLPNPMVGFSLPN+ LRSVHR
Sbjct: 186 FGGRKKTKLIDGTKKKRERYRSRPQWNQVPFDGSHEEPMPLPNPMVGFSLPNDGLRSVHR 245
Query: 274 NLPDQALGPPFFYYENVALAPKGVWTTISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPI 333
NLPD ALGPPFFYYENVALAPKGVWTTISRFLYDI PEFVDSKYFCAAARKRGYIHNLPI
Sbjct: 246 NLPDHALGPPFFYYENVALAPKGVWTTISRFLYDIYPEFVDSKYFCAAARKRGYIHNLPI 305
Query: 334 ENRSPVLPMPPKTISEAFPNTKRWWPSWDPRRQFNCLQTCMASAKLTERIRCALGRFSDV 393
ENRSPVLP+PPKTISEAFP+TK WWPSWDPRRQFNCLQT +ASAK TERIRCALGRF D
Sbjct: 306 ENRSPVLPIPPKTISEAFPSTKMWWPSWDPRRQFNCLQTYVASAKHTERIRCALGRFGDA 365
Query: 394 PTPQVQKYVLDECRKWNLVWVGKNKVAPLEPDEMEFLLGYPRNHTRGVSRTERYRALG 451
P VQK VL+ECRKWNLVWVGKNKVA LEPDEMEFLLGYPRNHTRGVSR LG
Sbjct: 366 LPPAVQKSVLEECRKWNLVWVGKNKVATLEPDEMEFLLGYPRNHTRGVSRKRDIELLG 423
>Os11g0109200 C-5 cytosine-specific DNA methylase family protein
Length = 473
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/303 (66%), Positives = 218/303 (71%), Gaps = 41/303 (13%)
Query: 38 STRLPQDANGKANGSG--ALVAEFMGMGFPKEMILKAIKEIGXXXXXXXXXXXXXYQAIG 95
S+ + DANGKANGS ALVA F+GMGF +EM+ +AIKEIG YQAIG
Sbjct: 6 SSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLTYQAIG 65
Query: 96 GDASVGNCSASACAPQTLEVDEEEDDTNWDEYDTAGNCDRTPHSDGSGDEDFFQEMSEKD 155
D SVGN S SAC PQ LE ++EE+D NWDE DT N DR +SDGSGDEDF QEMSEKD
Sbjct: 66 SDPSVGNSSHSACDPQILEEEDEEEDVNWDEDDTVDNFDRATYSDGSGDEDFLQEMSEKD 125
Query: 156 EKMKSLVNMGFPEDEAKMAIDRCLDAPVAVLVDSIYASQEAGNGYSANLSDYEDTEFSSF 215
EK+KSLV+MGFPEDE DTEFSSF
Sbjct: 126 EKIKSLVSMGFPEDE--------------------------------------DTEFSSF 147
Query: 216 GGRKKTRFVDGSKK-RKRYGSGPSGNQVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHRN 274
GGRKKT+ +DGSKK R+RY S P NQVPFDGSHEEPMPLPN MVGFSLPN+ LRSVHRN
Sbjct: 148 GGRKKTKLIDGSKKKRERYRSRPQWNQVPFDGSHEEPMPLPNSMVGFSLPNDGLRSVHRN 207
Query: 275 LPDQALGPPFFYYENVALAPKGVWTTISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPIE 334
LPDQALGPPFFYYENVALAPKGVWTTISRFLYDI PEFV SKYFCAAARKRGYIHNLPI+
Sbjct: 208 LPDQALGPPFFYYENVALAPKGVWTTISRFLYDIYPEFVYSKYFCAAARKRGYIHNLPIK 267
Query: 335 NRS 337
NR+
Sbjct: 268 NRN 270
Score = 292 bits (748), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 138/163 (84%), Positives = 151/163 (92%)
Query: 435 RNHTRGVSRTERYRALGNSFQVDTVAYHLSVLRDLFPNGMNVLSLFSGIGGAEVALHRLG 494
RN+TRGVSRT RYRALGNSFQVDTVAYHLSVLRD+FPNGMNVLSLFSGIGGAEVALHRLG
Sbjct: 269 RNYTRGVSRTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLG 328
Query: 495 IHMKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADVRHLTTERIETFIRRFGGFDLVIG 554
I MKTV+ VE SEVN T+L+SWWDQTQTGTLIEIADV++LT ERIE FIRRFGGFDLVIG
Sbjct: 329 ICMKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADVQNLTAERIELFIRRFGGFDLVIG 388
Query: 555 GSPCNNLAGSNRHHRDGLEGEHSALFYDYIRILEHVKATMSAV 597
GSPCNNLAGSNR+HRDGLEG+HSALFY Y RIL+ VK M+++
Sbjct: 389 GSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMASI 431
>Os05g0133900 Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta)
(BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1)
Length = 667
Score = 310 bits (793), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/488 (36%), Positives = 269/488 (55%), Gaps = 56/488 (11%)
Query: 144 DEDFFQEMSEKDEKMKSLVNMGFPEDEAKMAIDRC-LDAPVAVLVDSIYASQ-------- 194
DE F M +K L+ MGF E+E ID+ +A V L D+I+A +
Sbjct: 192 DESLFGVM----DKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRIASSIEQK 247
Query: 195 ----------EAGNGYSA------NLSDYEDTEFSSFGGRKKTRFVDGSK-KRKRYGSGP 237
E YSA L Y+D + R K F+D S R G+ P
Sbjct: 248 EVKVEPDFLDETETSYSAYHPSNSGLRYYDDDHDNIRIKRAKHMFIDDSAGSSSRAGNQP 307
Query: 238 SGN-------QVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHRNLPDQALGPPFFYYENV 290
+ + DGS +E P + RN+ PP+F Y NV
Sbjct: 308 NLDPWLKDHRATTSDGSVKEEFDAMTP------------GIRRNVRSDVANPPYFLYGNV 355
Query: 291 ALAPKGVWTTISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPIENRSPVLPMPPKTISEA 350
PK W +S FLY+++PEFV+S++F A +RK GYIHNLP E R ++P P TI EA
Sbjct: 356 VEIPKATWRQLSEFLYNVEPEFVNSQFFSALSRKEGYIHNLPTEGRRNLVPRSPMTIEEA 415
Query: 351 FPNTKRWWPSWDPRRQFNCLQTCMASA-KLTERIRCALGRFSDVPTPQVQKYVLDECRKW 409
FP T++ WPSWD R+Q N + T +A +L ER+ + + + + +++ +C+
Sbjct: 416 FPFTRQCWPSWDTRKQLNSVATEVAGIEQLCERLGKMVRDSGGYLSQEKKTHIMHQCKLA 475
Query: 410 NLVWVGKNKVAPLEPDEMEFLLGYPRNHTR--GVSRTERYRALGNSFQVDTVAYHLSVLR 467
NL+WVG ++++PL+P ++E +LGYPR HT G++ +R A+ SFQ DT+ Y LSVL+
Sbjct: 476 NLIWVGPDRLSPLDPQQVERILGYPRKHTNLFGLNPQDRIEAMRYSFQTDTLGYLLSVLK 535
Query: 468 DLFPNGMNVLSLFSGIGGAEVALHRLGIHMKTVISVEKSEVNRTILKSWWDQT-QTGTLI 526
DL+P+G+ VLS++SGIGGA +ALHRLGI ++ V+SV++S+ NR IL+ WW T Q G L
Sbjct: 536 DLYPDGLRVLSIYSGIGGAAIALHRLGIPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLR 595
Query: 527 EIADVRHLTTERIETFIRRFGGFDLVIGGSPCNNLAGSNRHHRDGLEGEHSALFYDYIRI 586
+I + L +E ++ FGGFD++IGG+ + G+ + G++ S F++Y+R+
Sbjct: 596 QINTIWKLKINVLEDLVKEFGGFDIIIGGNFSSCKGGTTVNSSMGMD---SNQFFEYVRV 652
Query: 587 LEHVKATM 594
++ VK M
Sbjct: 653 VQRVKHIM 660
>Os05g0313900 Protein prenyltransferase domain containing protein
Length = 1070
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 124/215 (57%), Gaps = 55/215 (25%)
Query: 146 DFFQEMSEKDEKMKSLVNMGFPEDEAKMAIDRCLDAPVAVLVDSIYASQEAGNGYSANLS 205
DF QE+SE DEK+KSLV+MGFPEDEAK AI RC GN YSANLS
Sbjct: 886 DFLQELSENDEKIKSLVSMGFPEDEAKTAITRC------------------GNVYSANLS 927
Query: 206 DYEDTEFSSFGGRKKTRFVDGSKKRKRYGSGPSGNQVPFDGSHEEPMPLPNPMVGFSLPN 265
DYED EFSSFGGRK TRF+DGSKK+ G G + +
Sbjct: 928 DYEDAEFSSFGGRKNTRFMDGSKKKSGMEVGHKGIKCHLVTA------------------ 969
Query: 266 ERLRSVHRNLPDQALGPPFFYYENVALAPKGVWTTISRFLYDIQPEFVDSKYFCAAARKR 325
+ Q L ++ GVWTTISRFL+DIQPEFV S FCAAARK
Sbjct: 970 ---------MKSQCLCQILWWI--------GVWTTISRFLFDIQPEFVGS--FCAAARKM 1010
Query: 326 GYIHNLPIENRSPVLPMPPKTISEAFPNTKRWWPS 360
YIHNLPIENRSPVLP+PP TISEAF T WWPS
Sbjct: 1011 DYIHNLPIENRSPVLPLPPNTISEAFLPTNMWWPS 1045
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,187,336
Number of extensions: 1119172
Number of successful extensions: 3139
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3125
Number of HSP's successfully gapped: 8
Length of query: 597
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 490
Effective length of database: 11,448,903
Effective search space: 5609962470
Effective search space used: 5609962470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)