Os05g0313900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0313900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.26 | 0.371 | 7.19 | 1.68 | 1.65 | 0.273 | 0.131 | 1.93 | 0.381 | 17.7 | 20.6 | 1611 | -- | -- |
| 66.07 | 0.381 | 7.25 | 1.26 | 1.57 | 0.283 | -0.021 | -- | 0.294 | 17.9 | 29.41 | 2101 | -- | -- |
| 62.17 | 0.367 | 7.19 | 1.7 | 1.65 | 0.252 | -- | 1.92 | 0.383 | 17.7 | 20.83 | 1604 | -- | -- |
| 66.07 | 0.381 | 7.25 | 1.26 | 1.57 | 0.282 | -- | -- | 0.294 | 17.9 | 29.4 | 4927 | -- | -- |
| 203.16 | 0.664 | 7.15 | 1.71 | -- | 0.289 | -- | 2.12 | 0.415 | -- | 20.94 | 1861 | -- | -- |
| 69.47 | 0.391 | 7.24 | 1.32 | 1.66 | -- | 0.145 | -- | 0.311 | 17.7 | -- | -- | -- | -- |
| 69.53 | 0.39 | 7.24 | 1.31 | 1.66 | -- | -- | -- | 0.311 | 17.7 | -- | -- | -- | -- |
| 174.58 | 0.618 | 7.23 | 1.11 | -- | 0.742 | -- | -- | 0.215 | -- | 28.99 | 4874 | -- | -- |
| 78.16 | 0.412 | 7.36 | -- | 1.66 | 0.885 | -- | -- | -0.184 | 17.7 | 26.2 | 47520 | -- | -- |
| 212.04 | 0.68 | 7.22 | 1.26 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 115.08 | 0.502 | 7.28 | -- | 1.64 | -- | -- | -- | 0.165 | 17.7 | -- | -- | -- | -- |
| 197.58 | 0.657 | 7.3 | -- | -- | 0.751 | -- | -- | -0.085 | -- | 26.3 | 47520 | -- | -- |
| 254.08 | 0.744 | 7.25 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.68 | wind | 5 | 720 | > th | dose independent | rect. | 8 | 1 |
| 2 | 60.92 | wind | 5 | 720 | < th | dose independent | rect. | 5 | 6 |
| 3 | 60.95 | wind | 5 | 720 | > th | dose independent | rect. | 7 | 4 |
| 9 | 61.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 11 | 61.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 20 | 61.56 | humidity | 90 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 28 | 61.67 | humidity | 90 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 33 | 61.73 | wind | 3 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 50 | 61.88 | humidity | 90 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 54 | 61.90 | humidity | 90 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 56 | 61.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 63 | 61.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 65 | 61.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 67 | 62.00 | wind | 5 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 70 | 62.02 | humidity | 90 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 88 | 62.09 | wind | 5 | 720 | < th | dose independent | rect. | 7 | 3 |
| 96 | 62.14 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 100 | 62.16 | humidity | 90 | 1440 | > th | dose independent | rect. | 10 | 17 |
| 103 | 62.17 | radiation | 20 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 106 | 62.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 199 | 62.40 | wind | 3 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 200 | 62.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 235 | 62.47 | humidity | 50 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 237 | 62.47 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 239 | 62.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 242 | 62.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 244 | 62.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 258 | 62.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 301 | 62.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 333 | 62.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 343 | 62.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 351 | 62.66 | temperature | 20 | 1440 | > th | dose independent | sin | 0 | NA |
| 354 | 62.66 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 374 | 62.68 | temperature | 20 | 10 | > th | dose dependent | sin | 1 | NA |
| 376 | 62.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 411 | 62.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 420 | 62.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 438 | 62.74 | temperature | 20 | 1440 | < th | dose independent | sin | 0 | NA |
| 464 | 62.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 479 | 62.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 505 | 62.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 512 | 62.77 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 516 | 62.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 22 |
| 534 | 62.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 542 | 62.79 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 544 | 62.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 18 |
| 553 | 62.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 559 | 62.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 561 | 62.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 565 | 62.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 574 | 62.80 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 17 |
| 581 | 62.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 583 | 62.81 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 2 | 7 |
| 586 | 62.81 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 588 | 62.81 | humidity | 50 | 1440 | > th | dose dependent | rect. | 22 | 5 |
| 611 | 62.82 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 21 |
| 642 | 62.84 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 661 | 62.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 670 | 62.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 682 | 62.86 | humidity | 90 | 1440 | < th | dose independent | sin | 15 | NA |
| 700 | 62.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 711 | 62.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 748 | 62.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 772 | 62.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 794 | 62.91 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 805 | 62.92 | humidity | 90 | 1440 | > th | dose independent | sin | 16 | NA |
| 849 | 62.94 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 877 | 62.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 883 | 62.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 892 | 62.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 912 | 62.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 946 | 62.97 | humidity | 80 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 955 | 62.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 969 | 62.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 989 | 62.99 | humidity | 80 | 1440 | > th | dose dependent | rect. | 13 | 14 |