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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0108900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UBA-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.021) R2 : 0.0333
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.176 (0.0443) R2dN8 : 0.043 R2N8 : 0.0333
σ : 0.396
deviance : 72.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.02 0.393 2.19 -1.7 0.00474 -59.2 -0.271 -125 0.158 3.24 15 1442 -- --
71.54 0.397 2.93 -0.104 0.0377 -0.127 -0.29 -- 0.161 5.5 15 1442 -- --
70.2 0.39 2.2 -1.68 0.0265 -59.4 -- -125 0.154 6.23 14.91 1407 -- --
71.03 0.395 2.93 -0.0645 0.0571 0.365 -- -- 0.173 8.79 16.2 397 -- --
70.25 0.39 2.19 -1.69 -- -59.4 -- -125 0.16 -- 14.92 1425 -- --
71.57 0.397 2.93 -0.0986 0.0417 -- -0.276 -- 0.163 5.83 -- -- -- --
71.65 0.396 2.93 -0.0993 0.0583 -- -- -- 0.164 8.88 -- -- -- --
71.2 0.393 2.93 -0.0613 -- 0.352 -- -- 0.173 -- 16.2 397 -- --
71.13 0.395 2.93 -- 0.0569 0.398 -- -- 0.181 8.86 16.2 397 -- --
71.84 0.396 2.93 -0.0993 -- -- -- -- 0.165 -- -- -- -- --
71.91 0.397 2.93 -- 0.0581 -- -- -- 0.175 9.01 -- -- -- --
71.28 0.393 2.93 -- -- 0.374 -- -- 0.185 -- 16.71 442 -- --
72.1 0.396 2.93 -- -- -- -- -- 0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.24 temperature 20.0 30 > th dose dependent rect. 2 1
2 64.27 humidity 80.0 30 > th dose independent rect. 2 1
3 64.28 temperature 20.0 30 > th dose independent rect. 2 1
4 64.29 wind 3.0 30 < th dose dependent rect. 2 1
5 64.29 humidity 80.0 30 > th dose dependent rect. 2 1
11 64.38 atmosphere 1005.0 30 > th dose dependent rect. 2 1
15 64.41 wind 1.0 30 < th dose independent rect. 2 1
19 64.43 atmosphere 1005.0 30 > th dose independent rect. 2 1
24 64.46 temperature 10.0 30 > th dose independent rect. 2 1
26 64.46 temperature 30.0 30 < th dose independent rect. 2 1
27 64.46 humidity 50.0 30 > th dose independent rect. 2 1
30 64.46 atmosphere 995.0 30 > th dose independent rect. 2 1
32 64.46 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 64.46 radiation 1.0 30 < th dose independent rect. 2 1
39 64.46 precipitation 0.1 30 < th dose independent rect. 2 1
40 64.46 temperature 10.0 30 > th dose independent rect. 3 23
41 64.46 radiation 1.0 30 < th dose dependent rect. 2 1
46 64.46 precipitation 0.1 30 < th dose dependent rect. 2 1
49 64.63 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 64.80 temperature 30.0 30 < th dose dependent rect. 2 1
61 65.05 wind 1.0 30 > th dose independent rect. 2 1
73 65.32 wind 9.0 30 < th dose independent rect. 3 23
105 65.83 atmosphere 995.0 30 > th dose independent rect. 3 23
113 66.72 wind 7.0 720 < th dose independent rect. 3 8
114 66.96 precipitation 0.1 10 < th dose independent rect. 3 23
115 66.96 precipitation 0.1 10 < th dose dependent rect. 3 23
116 66.98 atmosphere 1015.0 720 < th dose independent rect. 3 8
119 67.21 temperature 15.0 720 > th dose independent rect. 3 8
126 67.59 precipitation 0.1 720 < th dose independent rect. 3 8
127 67.59 precipitation 0.1 720 < th dose dependent rect. 3 8
129 67.80 temperature 15.0 1440 > th dose independent rect. 3 1
130 67.88 wind 3.0 270 > th dose dependent rect. 10 1
131 67.90 wind 7.0 270 > th dose independent rect. 7 6
135 67.91 wind 7.0 30 < th dose independent rect. 3 14
136 67.91 temperature 15.0 720 > th dose independent rect. 11 16
138 67.95 precipitation 0.1 720 < th dose independent rect. 23 16
139 67.95 precipitation 0.1 720 < th dose dependent rect. 23 16
140 67.96 atmosphere 1015.0 1440 < th dose independent rect. 3 1
143 67.97 radiation 40.0 720 < th dose independent rect. 15 8
146 68.04 temperature 15.0 720 > th dose independent rect. 23 16
148 68.07 atmosphere 995.0 720 > th dose independent rect. 3 8
156 68.11 wind 5.0 10 > th dose dependent rect. 11 3
160 68.16 wind 9.0 720 < th dose independent rect. 23 16
165 68.19 wind 5.0 270 > th dose independent rect. 10 1
166 68.19 temperature 10.0 720 > th dose independent rect. 15 8
172 68.22 wind 5.0 10 > th dose independent rect. 11 3
178 68.23 wind 5.0 270 > th dose dependent rect. 7 6
189 68.25 wind 7.0 10 > th dose dependent rect. 12 1
193 68.26 wind 7.0 270 > th dose independent rect. 23 14
253 68.47 humidity 50.0 720 > th dose independent rect. 3 8
279 68.52 radiation 40.0 30 < th dose dependent rect. 11 16
288 68.54 wind 7.0 270 > th dose dependent rect. 23 14
289 68.55 atmosphere 995.0 720 > th dose independent rect. 23 16
300 68.58 atmosphere 1015.0 720 < th dose independent rect. 23 16
310 68.60 radiation 30.0 30 < th dose independent rect. 11 16
321 68.63 wind 9.0 4320 < th dose independent rect. 3 1
332 68.65 radiation 1.0 4320 < th dose dependent rect. 3 1
343 68.66 temperature 30.0 1440 < th dose independent rect. 3 1
347 68.66 humidity 50.0 1440 > th dose independent rect. 3 1
356 68.66 atmosphere 995.0 1440 > th dose independent rect. 3 1
357 68.66 radiation 1.0 1440 < th dose independent rect. 3 1
384 68.66 temperature 10.0 1440 > th dose independent rect. 4 23
414 68.67 wind 9.0 720 < th dose independent rect. 15 8
417 68.68 wind 7.0 270 > th dose independent sin 6 NA
440 68.72 wind 9.0 10 < th dose dependent rect. 3 23
491 68.79 wind 5.0 10 > th dose independent rect. 11 1
492 68.79 humidity 90.0 90 < th dose independent rect. 1 2
530 68.84 wind 7.0 270 > th dose dependent sin 6 NA
535 68.85 temperature 15.0 90 > th dose independent rect. 3 14
537 68.86 atmosphere 1015.0 30 < th dose independent rect. 3 23
585 68.90 wind 3.0 10 > th dose dependent rect. 11 1
600 68.91 temperature 25.0 90 > th dose dependent rect. 1 3
620 68.94 humidity 50.0 10 > th dose independent rect. 3 23
624 68.95 wind 7.0 10 < th dose independent rect. 23 23
718 69.02 wind 7.0 10 > th dose dependent rect. 18 20
757 69.05 wind 9.0 720 < th dose independent rect. 11 16
758 69.05 wind 7.0 10 < th dose independent rect. 3 18
829 69.10 radiation 30.0 30 < th dose independent rect. 11 4
865 69.12 wind 3.0 30 > th dose dependent rect. 13 1
897 69.14 wind 9.0 30 < th dose dependent rect. 3 14
907 69.16 wind 7.0 270 < th dose independent sin 6 NA
930 69.17 precipitation 0.1 720 < th dose independent rect. 15 8
940 69.17 precipitation 0.1 720 < th dose dependent rect. 15 8
977 69.20 wind 7.0 30 > th dose independent sin 3 NA