BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0108900 Os12g0108900|Os12g0108900
(437 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G14620.1 | chr5:4715429-4718578 REVERSE LENGTH=627 299 3e-81
AT5G15380.1 | chr5:4991347-4994826 FORWARD LENGTH=625 291 4e-79
AT3G17310.2 | chr3:5909294-5912838 REVERSE LENGTH=711 120 1e-27
>AT5G14620.1 | chr5:4715429-4718578 REVERSE LENGTH=627
Length = 626
Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 176/416 (42%), Positives = 221/416 (53%), Gaps = 55/416 (13%)
Query: 19 GSAPSALVAYFLGMGFSREMVFRAIKEIGNDNNNTFPHLLQLLPFLSGDTDSEQILELLL 78
GS+ S + +FL MGF E V +AI+E G DN + L P
Sbjct: 108 GSSKSKAIDHFLAMGFDEEKVVKAIQEHGEDNMEAIANALLSCP---------------- 151
Query: 79 TYQILXXXXXXXXXXXXXXXXXXXFDRATYSDGSGDEDFLQEMSEKD-------EKIKSL 131
D ++ D + D L EKD KI+SL
Sbjct: 152 ----------EAKKLPAAVEEEDGIDWSSSDDDTNYTDMLNSDDEKDPNSNENGSKIRSL 201
Query: 132 VSMGFPEDEAMRAITRCGLDASVDLLVESIYAPASAGNVYFTNLSDYEDTEFSSFGGRXX 191
V MGF E EA A+ RCG + + L + + A A EFS F
Sbjct: 202 VKMGFSELEASLAVERCGENVDIAELTDFLCAAQMA-------------REFSEFYTEHE 248
Query: 192 XXXXXXXXXXRERYRSRPQWNQVPFDGSHEEPMPLPNPMVGFSLPNDGLRSVHRNLPDHA 251
R R+ S+ + P +EP+ LPNPM+GF +PN+ HR+LP+ A
Sbjct: 249 EQKPRHNIKKR-RFESKGE----PRSSVDDEPIRLPNPMIGFGVPNEPGLITHRSLPELA 303
Query: 252 LGPPFFYYENVALAPKGVWTTISRFLYDIYPEFVDSKYFCAAARKRGYIHNLPIENRSPV 311
GPPFFYYENVAL PKGVW TISR L++I PEFVDSKYFC AARKRGYIHNLPI NR +
Sbjct: 304 RGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLPINNRFQI 363
Query: 312 LPIPPKTISEAFPSTKMWWPSWDPRRQFNCLQTYVASAKHTERIRCALGRFGDALPPA-- 369
P P TI +AFP +K WWP WD R + NC+ T SA+ T RIR AL + + P
Sbjct: 364 QPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCTGSAQLTNRIRVALEPYNEEPEPPKH 423
Query: 370 VQKSVLEECRKWNLVWVGKNKVATLEPDEMEFLLGYPRNHTR--GVSRKRDIELLG 423
VQ+ V+++C+KWNLVWVGKNK A LEPDEME +LG+P+NHTR G+SR + LG
Sbjct: 424 VQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERFKSLG 479
>AT5G15380.1 | chr5:4991347-4994826 FORWARD LENGTH=625
Length = 624
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/395 (42%), Positives = 216/395 (54%), Gaps = 42/395 (10%)
Query: 20 SAPSALVAYFLGMGFSREMVFRAIKEIGNDNNNTFPHLLQLLPFLSGDTDSEQILELLLT 79
S+ S ++ +F+ MGF E V +A++E GD D +I LLT
Sbjct: 108 SSKSKVINHFIAMGFPEEHVIKAMQE-------------------HGDEDVGEITNALLT 148
Query: 80 YQILXXXXXXXXXXXXXXXXXXXFDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPED 139
Y + + SD +ED L S +D +++L+ MG+ +
Sbjct: 149 YAEVDKLRESEDMNININDDDDDNLYSLSSDD--EEDELNNSSNEDRILQALIKMGYLRE 206
Query: 140 EAMRAITRCGLDASVDLLVESIYAPASAGNVYFTNLSDYEDTEFSSFGGRXXXXXXXXXX 199
+A AI RCG DAS++ +V+ I A A +F
Sbjct: 207 DAAIAIERCGEDASMEEVVDFICAAQMA-------------RQFDEIYAEPDKKELMNNN 253
Query: 200 XXRERYRSRPQWNQVPFDGSHEEPMPLPNPMVGFSLPNDGLRSVHR--NLPDHALGPPFF 257
R Y + P + ++ + LP M+GF +PN +HR +PD A GPPFF
Sbjct: 254 KKRRTY------TETPRKPNTDQLISLPKEMIGFGVPNHPGLMMHRPVPIPDIARGPPFF 307
Query: 258 YYENVALAPKGVWTTISRFLYDIYPEFVDSKYFCAAARKRGYIHNLPIENRSPVLPIPPK 317
YYENVA+ PKGVW IS LYDI PEFVDSK+FCAAARKRGYIHNLPI+NR + P
Sbjct: 308 YYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIHNLPIQNRFQIQPPQHN 367
Query: 318 TISEAFPSTKMWWPSWDPRRQFNCLQTYVASAKHTERIRCALGRFGDALPPAVQKSVLEE 377
TI EAFP TK WWPSWD R + NCL T +AS++ TE+IR AL R+ P VQK V+ E
Sbjct: 368 TIQEAFPLTKRWWPSWDGRTKLNCLLTCIASSRLTEKIREALERYDGETPLDVQKWVMYE 427
Query: 378 CRKWNLVWVGKNKVATLEPDEMEFLLGYPRNHTRG 412
C+KWNLVWVGKNK+A L+ DEME LLG+PR+HTRG
Sbjct: 428 CKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRG 462
>AT3G17310.2 | chr3:5909294-5912838 REVERSE LENGTH=711
Length = 710
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 250 HALGP-----PFFYYENVALAPKGVWTTISRFLYDIYPEFVDSKYFCAAARKRGYIHNLP 304
+LGP P+F+Y + W+ IS FL+ I+PE VD++ A R GY+HNLP
Sbjct: 384 QSLGPKVARRPYFFYGQLGELSPSWWSKISGFLFGIHPEHVDTRLCSALRRTEGYLHNLP 443
Query: 305 IENRSPVLPIPPKTISEAFPSTKMWWPSWDPRRQFN---CLQTYVASAKHTERIRCALGR 361
NR LP P TI +A P + WWP WD R+ FN C A+ ERI +
Sbjct: 444 TVNRFNTLPNPRLTIQDAMPHMRSWWPQWDIRKHFNSGTCSNMKDATLL-CERIGRRIAE 502
Query: 362 FGDALPPAVQKSVLEECRKWNLVWVGKNKVATLEPDEMEFLLGYPRNHT 410
Q +L C NL+W+ N ++ LEP+ +E ++GYP NHT
Sbjct: 503 CKGKPTQQDQTLILRHCHTSNLIWIAPNILSPLEPEHLECIMGYPMNHT 551
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,888,532
Number of extensions: 427837
Number of successful extensions: 949
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 3
Length of query: 437
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,310,137
Effective search space: 2783895895
Effective search space used: 2783895895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)