FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0109200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C-5 cytosine-specific DNA methylase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0195) R2 : 0.00118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0301 (0.041) R2dN8 : 0.00153 R2N8 : 0.00118
σ : 0.367
deviance : 61.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.24 0.362 3.2 0.155 0.0751 -0.435 -0.107 -1.33 -0.0365 13.1 4.867 4067 -- --
60.04 0.361 3.18 0.184 0.0811 -0.289 -0.175 -- -0.0563 13.1 4.6 5541 -- --
59.29 0.359 3.2 0.15 0.0766 -0.436 -- -1.37 -0.0383 12.8 4.9 4050 -- --
60.18 0.361 3.18 0.188 0.08 -0.287 -- -- -0.0536 12.6 4.602 5541 -- --
59.62 0.36 3.21 0.14 -- -0.411 -- -1.35 -0.0436 -- 4.9 4131 -- --
61.32 0.367 3.18 0.0705 0.0548 -- -0.158 -- -0.0212 13.1 -- -- -- --
61.42 0.367 3.18 0.0647 0.0555 -- -- -- -0.0223 12.4 -- -- -- --
60.38 0.362 3.18 0.187 -- -0.285 -- -- -0.0555 -- 4.9 5940 -- --
60.87 0.363 3.18 -- 0.0669 -0.182 -- -- -0.0587 12.4 4.8 5520 -- --
61.61 0.367 3.18 0.0628 -- -- -- -- -0.0232 -- -- -- -- --
61.53 0.367 3.18 -- 0.0546 -- -- -- -0.0295 12.3 -- -- -- --
61.11 0.364 3.18 -- -- -0.18 -- -- -0.0583 -- 4.765 5922 -- --
61.72 0.367 3.18 -- -- -- -- -- -0.0301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.81 precipitation 0.1 90 > th dose independent rect. 21 1
5 50.81 precipitation 0.1 90 > th dose dependent rect. 21 1
9 53.71 temperature 25.0 30 > th dose independent rect. 21 1
14 55.40 humidity 90.0 90 > th dose dependent rect. 20 1
20 56.77 wind 1.0 270 < th dose dependent rect. 18 2
21 56.78 precipitation 0.1 270 > th dose independent rect. 18 1
22 56.78 wind 1.0 270 < th dose independent rect. 18 2
23 56.78 precipitation 0.1 270 > th dose dependent rect. 18 1
26 57.03 precipitation 0.1 270 > th dose dependent rect. 18 4
30 57.05 precipitation 0.1 270 > th dose independent rect. 18 4
37 57.08 precipitation 0.1 270 > th dose dependent rect. 18 9
41 57.10 humidity 90.0 10 > th dose dependent rect. 22 1
53 57.21 precipitation 0.1 270 > th dose independent rect. 18 9
55 57.22 radiation 1.0 10 > th dose independent rect. 16 3
77 57.33 humidity 90.0 270 > th dose dependent rect. 18 1
81 57.47 wind 1.0 270 < th dose dependent rect. 16 3
89 57.60 humidity 90.0 270 > th dose dependent rect. 18 3
102 57.81 temperature 20.0 10 > th dose dependent rect. 21 2
125 58.15 temperature 25.0 10 > th dose independent rect. 16 2
130 58.27 humidity 90.0 270 > th dose dependent rect. 15 6
137 58.33 temperature 25.0 90 > th dose dependent rect. 16 1
163 58.47 radiation 1.0 90 > th dose dependent rect. 16 1
183 58.55 atmosphere 1000.0 30 > th dose independent rect. 17 23
191 58.58 temperature 25.0 10 > th dose dependent rect. 16 2
195 58.62 humidity 90.0 10 > th dose independent rect. 22 1
217 58.68 atmosphere 1005.0 30 > th dose independent rect. 21 2
222 58.70 radiation 20.0 90 > th dose independent rect. 16 1
243 58.73 wind 7.0 30 > th dose independent rect. 16 1
245 58.73 wind 7.0 30 > th dose dependent rect. 16 1
260 58.75 precipitation 0.1 720 < th dose independent rect. 17 8
262 58.75 precipitation 0.1 720 < th dose dependent rect. 17 8
289 58.81 atmosphere 1010.0 30 < th dose dependent rect. 16 1
310 58.84 temperature 30.0 30 < th dose independent rect. 16 1
311 58.84 humidity 50.0 30 > th dose independent rect. 16 1
313 58.84 humidity 90.0 30 < th dose independent rect. 16 1
320 58.85 humidity 70.0 30 < th dose independent rect. 16 1
323 58.85 humidity 50.0 30 > th dose dependent rect. 16 1
324 58.85 humidity 80.0 30 < th dose dependent rect. 16 1
342 58.86 wind 1.0 30 > th dose independent rect. 16 1
345 58.86 wind 9.0 30 < th dose independent rect. 16 1
346 58.86 temperature 10.0 30 > th dose independent rect. 16 1
349 58.86 atmosphere 995.0 30 > th dose independent rect. 16 1
351 58.86 atmosphere 1010.0 30 < th dose independent rect. 16 1
355 58.86 radiation 40.0 30 < th dose independent rect. 16 1
356 58.86 precipitation 0.1 30 < th dose independent rect. 16 1
357 58.86 temperature 10.0 30 > th dose independent rect. 17 23
358 58.86 precipitation 0.1 30 < th dose independent rect. 17 23
364 58.86 precipitation 0.1 30 < th dose dependent rect. 16 1
365 58.86 precipitation 0.1 30 < th dose dependent rect. 17 23
368 58.87 temperature 10.0 1440 > th dose independent rect. 17 1
374 58.87 radiation 30.0 1440 < th dose independent rect. 17 1
380 58.87 temperature 10.0 1440 > th dose independent rect. 18 23
383 58.87 wind 9.0 30 < th dose dependent rect. 16 1
389 58.88 atmosphere 995.0 30 > th dose dependent rect. 16 1
401 58.89 radiation 40.0 30 < th dose dependent rect. 16 1
404 58.90 radiation 20.0 30 < th dose independent rect. 16 1
463 58.94 precipitation 0.1 720 < th dose independent rect. 15 8
465 58.94 precipitation 0.1 720 < th dose dependent rect. 15 8
490 58.98 precipitation 0.1 720 < th dose independent rect. 13 16
492 58.98 temperature 30.0 30 < th dose dependent rect. 16 1
499 58.98 precipitation 0.1 720 < th dose dependent rect. 13 16
526 59.01 humidity 80.0 14400 < th dose dependent rect. 1 8
538 59.03 humidity 90.0 90 > th dose independent rect. 20 1
547 59.04 wind 9.0 30 < th dose independent rect. 17 23
556 59.07 wind 5.0 14400 < th dose independent rect. 11 1
571 59.10 wind 5.0 14400 > th dose independent rect. 8 7
572 59.10 wind 5.0 14400 < th dose independent rect. 8 7
574 59.11 precipitation 0.1 720 < th dose independent rect. 13 7
577 59.11 precipitation 0.1 720 < th dose dependent rect. 13 7
585 59.14 wind 5.0 14400 < th dose independent rect. 9 4
589 59.15 wind 5.0 14400 > th dose independent rect. 11 1
596 59.16 wind 3.0 4320 > th dose dependent rect. 18 7
597 59.17 precipitation 0.1 14400 < th dose independent rect. 24 11
600 59.17 precipitation 0.1 14400 < th dose dependent rect. 24 11
606 59.18 precipitation 0.1 14400 > th dose independent rect. 24 11
609 59.18 wind 3.0 14400 > th dose dependent rect. 9 3
617 59.19 precipitation 0.1 14400 > th dose independent rect. 24 9
618 59.19 precipitation 0.1 720 < th dose independent rect. 11 16
621 59.19 wind 3.0 4320 > th dose dependent rect. 18 4
625 59.19 precipitation 0.1 720 < th dose dependent rect. 11 16
629 59.20 humidity 90.0 270 > th dose independent rect. 18 1
638 59.20 wind 5.0 4320 < th dose independent rect. 9 18
641 59.20 humidity 80.0 14400 < th dose dependent rect. 7 1
652 59.21 precipitation 0.1 14400 < th dose independent rect. 24 9
656 59.21 precipitation 0.1 720 < th dose independent rect. 3 17
657 59.21 humidity 50.0 30 > th dose independent rect. 17 23
660 59.21 wind 7.0 4320 < th dose dependent rect. 19 2
664 59.21 precipitation 0.1 14400 < th dose dependent rect. 24 9
668 59.21 precipitation 0.1 720 < th dose dependent rect. 3 17
676 59.22 wind 5.0 4320 < th dose independent rect. 19 22
677 59.22 wind 1.0 4320 > th dose dependent rect. 19 2
682 59.22 precipitation 0.1 14400 > th dose dependent rect. 24 11
687 59.23 precipitation 0.1 720 < th dose independent rect. 8 17
692 59.23 precipitation 0.1 720 < th dose dependent rect. 8 17
712 59.24 precipitation 0.1 14400 > th dose dependent rect. 24 9
723 59.25 wind 5.0 4320 > th dose independent rect. 9 18
724 59.25 wind 3.0 14400 > th dose dependent rect. 11 1
732 59.25 radiation 1.0 90 < th dose dependent rect. 22 22
748 59.26 precipitation 0.1 270 > th dose dependent sin 15 NA
804 59.29 wind 5.0 4320 < th dose independent rect. 18 7
812 59.29 wind 5.0 4320 > th dose independent rect. 19 22
816 59.29 wind 3.0 14400 > th dose dependent rect. 8 7
872 59.32 radiation 1.0 90 < th dose independent rect. 22 22
886 59.33 wind 5.0 4320 > th dose independent rect. 18 7
891 59.33 wind 5.0 14400 > th dose independent rect. 22 19
901 59.34 wind 1.0 10 > th dose independent rect. 21 2
904 59.34 wind 5.0 30 > th dose independent rect. 16 4
908 59.34 temperature 25.0 30 > th dose independent rect. 21 14
954 59.36 wind 5.0 14400 < th dose independent rect. 23 18
960 59.36 wind 5.0 4320 < th dose independent rect. 14 23
969 59.36 temperature 10.0 10 > th dose dependent rect. 18 22