BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0107600 Os11g0107600|Os11g0107600
         (257 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0107600  Prenylated rab acceptor PRA1 family protein         429   e-120
Os12g0107600  Prenylated rab acceptor PRA1 family protein         339   1e-93
Os05g0474400  Prenylated rab acceptor PRA1 family protein         171   6e-43
Os01g0827400  Prenylated rab acceptor PRA1 family protein         129   3e-30
Os03g0798400  Prenylated rab acceptor PRA1 family protein          64   7e-11

>Os11g0107600 Prenylated rab acceptor PRA1 family protein
          Length = 257

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/257 (90%), Positives = 233/257 (90%)

Query: 1   MAAASPPLLPTTVLPANATATVSPAPTSVSSADANPAATRAFLARLLDSVKRALSGARPW 60
           MAAASPPLLPTTVLPANATATVSPAPTSVSSADANPAATRAFLARLLDSVKRALSGARPW
Sbjct: 1   MAAASPPLLPTTVLPANATATVSPAPTSVSSADANPAATRAFLARLLDSVKRALSGARPW 60

Query: 61  PELIDRSALSRPESLSDAGARLRKNLAYFRVNYAAIVALSLAATXXXXXXXXXXXXXXXX 120
           PELIDRSALSRPESLSDAGARLRKNLAYFRVNYAAIVALSLAAT                
Sbjct: 61  PELIDRSALSRPESLSDAGARLRKNLAYFRVNYAAIVALSLAATLLAHPFSLAALLALLA 120

Query: 121 XXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAAIV 180
                   RPSDAPPLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAAIV
Sbjct: 121 AWCFLYLLRPSDAPPLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAAIV 180

Query: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGRELVLTMGERERSRELMRPWFG 240
           CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGRELVLTMGERERSRELMRPWFG
Sbjct: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGRELVLTMGERERSRELMRPWFG 240

Query: 241 YIFSPSLLANALHKGIA 257
           YIFSPSLLANALHKGIA
Sbjct: 241 YIFSPSLLANALHKGIA 257



>Os12g0107600 Prenylated rab acceptor PRA1 family protein
          Length = 220

 Score =  339 bits (869), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/219 (85%), Positives = 191/219 (87%)

Query: 1   MAAASPPLLPTTVLPANATATVSPAPTSVSSADANPAATRAFLARLLDSVKRALSGARPW 60
           MAAASPPLLPTTVLPAN TATVSPAPTSVSSADA PAATRAFLARLLDSVKRALSGARPW
Sbjct: 1   MAAASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPW 60

Query: 61  PELIDRSALSRPESLSDAGARLRKNLAYFRVNYAAIVALSLAATXXXXXXXXXXXXXXXX 120
           PELIDRSALS  ESLSD+GARLRKNLAYFRVNYAAIVALSLAA+                
Sbjct: 61  PELIDRSALSHSESLSDSGARLRKNLAYFRVNYAAIVALSLAASLLAHPFSLAALLALLA 120

Query: 121 XXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAAIV 180
                   RPSDAPPLAAFGRTFSDRETLGGLIVASAFV+FLTSVGSLIFSALALGAAIV
Sbjct: 121 AWCFLYLLRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIV 180

Query: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGR 219
           CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGR
Sbjct: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGR 219



>Os05g0474400 Prenylated rab acceptor PRA1 family protein
          Length = 220

 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 117/176 (66%), Gaps = 2/176 (1%)

Query: 38  ATRAFLARLLDSVKRALSGARPWPELIDRSALSRPESLSDAGARLRKNLAYFRVNYAAIV 97
           A R FL++L DS +R+LS  RPW EL+DRSA SRP+SLSDA +RLR+NLAYFRVNYAA+V
Sbjct: 39  AFRLFLSKLSDSARRSLSDRRPWTELVDRSAFSRPDSLSDATSRLRRNLAYFRVNYAAVV 98

Query: 98  ALSLAATXXXXXXXXXXXXXXXXXXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASA 157
           A +L A+                        R SD  P+  FGRTFSDRETL GL+VAS 
Sbjct: 99  AFALGASLLAHPFSLLVLLGLLAAWCFLYLFRGSD-QPVVLFGRTFSDRETLLGLVVASF 157

Query: 158 FVVFLTSVGSLIFSALALGAAIVCAHGAFRIPEDLFLDEPDQANG-AASVNLLSFI 212
              F TSV SLI S L +G AIV  HGA R+PEDLFLD+ D A+G +A+  LLSF+
Sbjct: 158 VAFFFTSVASLIISGLLVGGAIVAVHGACRMPEDLFLDDADAASGNSAAQGLLSFL 213



>Os01g0827400 Prenylated rab acceptor PRA1 family protein
          Length = 145

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 89/139 (64%), Gaps = 2/139 (1%)

Query: 75  LSDAGARLRKNLAYFRVNYAAIVALSLAATXXXXXXXXXXXXXXXXXXXXXXXXRPSDAP 134
           LS+A +RLR+NLAYFRVNYAA+VA SLAA+                        R +D  
Sbjct: 1   LSEATSRLRRNLAYFRVNYAAVVAFSLAASLLAHPFSLLVLLAILGGWCFLYVFRAAD-Q 59

Query: 135 PLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAAIVCAHGAFRIPEDLFL 194
           P+  FGRTF+DRETL GL+VAS    F+TSV SLI S L +G AIV  HGAFR+PEDLFL
Sbjct: 60  PVVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFL 119

Query: 195 DEPD-QANGAASVNLLSFI 212
           D+P   +NG  +  LLSF+
Sbjct: 120 DDPSVGSNGNTTSRLLSFL 138



>Os03g0798400 Prenylated rab acceptor PRA1 family protein
          Length = 230

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 60  WPELIDRSALSRPESLSDAGARLRKNLAYFRVNYAAIVALSLAATXXXXXXXXXXXXXXX 119
           W E++D +A SRPES  +A AR R+NLAYFR NYA    + +                  
Sbjct: 75  WREVLDATAFSRPESCGEARARARRNLAYFRANYALAALVLVFLGLVYRPVSMLAFLALF 134

Query: 120 XXXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAAI 179
                    R    PPLA  GR   DR  L  L VA+   V L+  G  +  +L L AA 
Sbjct: 135 AAWLGLYFGRGDGEPPLACMGREVDDRVVLAALSVATVLAVALSRAGLNLLVSLVLAAAA 194

Query: 180 VCAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGREL 221
           + AH AFR+  +++LDE D  +G+      SF+ S+ GG  L
Sbjct: 195 IGAHAAFRM--NVYLDERDAYDGS------SFMGSSYGGYAL 228



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,646,204
Number of extensions: 290194
Number of successful extensions: 1876
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1870
Number of HSP's successfully gapped: 7
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)