Os11g0107600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prenylated rab acceptor PRA1 family protein.
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Os11g0107600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prenylated rab acceptor PRA1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 339.66 | 0.866 | 6.05 | -1.39 | 0.299 | 1.72 | 1.24 | -3.2 | -0.236 | 1.16 | 30.05 | 1260 | -- | -- |
| 339.39 | 0.858 | 5.96 | -0.705 | 0.352 | 1.44 | 1.16 | -- | -0.0599 | 1.46 | 31.1 | 1268 | -- | -- |
| 345.82 | 0.866 | 6.04 | -1.35 | 0.291 | 1.69 | -- | -2.74 | -0.241 | 1.18 | 30.1 | 1256 | -- | -- |
| 344.4 | 0.864 | 5.95 | -0.774 | 0.305 | 1.4 | -- | -- | -0.124 | 0.932 | 31.1 | 1249 | -- | -- |
| 350.91 | 0.872 | 6.03 | -1.34 | -- | 1.75 | -- | -2.67 | -0.221 | -- | 30.1 | 1253 | -- | -- |
| 434.48 | 0.977 | 6.02 | -0.326 | 0.524 | -- | 1.53 | -- | -0.404 | 1.2 | -- | -- | -- | -- |
| 444.18 | 0.987 | 6.02 | -0.379 | 0.522 | -- | -- | -- | -0.412 | 1.14 | -- | -- | -- | -- |
| 350 | 0.871 | 5.95 | -0.77 | -- | 1.46 | -- | -- | -0.103 | -- | 31.1 | 1224 | -- | -- |
| 359.31 | 0.883 | 5.94 | -- | 0.309 | 1.29 | -- | -- | -0.0594 | 0.898 | 30.91 | 1234 | -- | -- |
| 461.04 | 1 | 6.01 | -0.359 | -- | -- | -- | -- | -0.401 | -- | -- | -- | -- | -- |
| 447.98 | 0.99 | 6.01 | -- | 0.515 | -- | -- | -- | -0.37 | 1.11 | -- | -- | -- | -- |
| 365.06 | 0.89 | 5.93 | -- | -- | 1.35 | -- | -- | -0.0427 | -- | 30.93 | 1224 | -- | -- |
| 464.45 | 1.01 | 6 | -- | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 331.75 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 2 | 333.06 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 16 | 333.44 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 17 | 333.48 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 18 | 333.60 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 20 | 333.73 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 26 | 334.32 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 27 | 334.73 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 36 | 335.37 | wind | 5 | 43200 | > th | dose independent | sin | 5 | NA |
| 37 | 335.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 38 | 335.48 | wind | 5 | 43200 | < th | dose independent | sin | 5 | NA |
| 41 | 335.66 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 50 | 335.88 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 56 | 336.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 72 | 336.73 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 74 | 336.77 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 82 | 336.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 87 | 337.04 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 92 | 337.20 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 107 | 337.28 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 108 | 337.35 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 118 | 337.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 122 | 337.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 125 | 337.63 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 130 | 337.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 132 | 337.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 157 | 338.04 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 165 | 338.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 166 | 338.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 171 | 338.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 172 | 338.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 176 | 338.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 208 | 338.64 | wind | 5 | 43200 | > th | dose dependent | sin | 6 | NA |
| 244 | 338.94 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 252 | 339.11 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 261 | 339.29 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 264 | 339.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 271 | 339.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 277 | 339.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 282 | 339.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 292 | 339.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 318 | 339.70 | radiation | 40 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 340 | 339.80 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 20 |
| 360 | 340.16 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 369 | 340.30 | wind | 7 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 372 | 340.39 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 382 | 340.49 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 405 | 340.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 420 | 340.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 430 | 340.96 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 437 | 341.09 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 439 | 341.09 | temperature | 30 | 1440 | > th | dose dependent | sin | 9 | NA |
| 459 | 341.25 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 472 | 341.39 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 586 | 342.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 605 | 342.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 619 | 342.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 678 | 342.90 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 679 | 342.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 824 | 343.29 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 831 | 343.34 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 844 | 343.46 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 845 | 343.46 | radiation | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 895 | 343.61 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 921 | 343.73 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 922 | 343.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 923 | 343.73 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 11 |