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Os05g0474400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prenylated rab acceptor PRA1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0154) R2 : 0.00137
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0256 (0.0324) R2dN8 : 0.00176 R2N8 : 0.00137
σ : 0.29
deviance : 38.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.99 0.225 11.3 0.831 0.394 -0.128 0.197 1.47 0.148 10.2 20.4 3393 -- --
24.31 0.231 11.4 0.427 0.436 -0.222 0.175 -- 0.0487 10.7 14.7 20909 -- --
23.12 0.224 11.3 0.82 0.395 -0.119 -- 1.38 0.143 10.1 19.96 3161 -- --
24.35 0.23 11.4 0.55 0.4 -0.195 -- -- 0.0899 10.1 12 20938 -- --
31.51 0.261 11.3 1.09 -- -0.392 -- 2.62 0.207 -- 24.46 2198 -- --
24.79 0.233 11.4 0.385 0.403 -- 0.153 -- 0.0175 10.2 -- -- -- --
24.88 0.234 11.4 0.391 0.402 -- -- -- 0.0178 10.1 -- -- -- --
33.82 0.271 11.4 0.584 -- -0.247 -- -- 0.108 -- 11.26 21018 -- --
26.47 0.24 11.4 -- 0.406 0.231 -- -- -0.111 10.2 20.5 47520 -- --
34.68 0.275 11.4 0.385 -- -- -- -- 0.0171 -- -- -- -- --
28.91 0.252 11.4 -- 0.401 -- -- -- -0.0257 10.1 -- -- -- --
36.46 0.281 11.4 -- -- 0.216 -- -- -0.105 -- 20.4 47520 -- --
38.6 0.29 11.4 -- -- -- -- -- -0.0256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.28 radiation 10.0 30 < th dose independent rect. 8 20
3 21.41 radiation 20.0 30 < th dose dependent rect. 9 19
24 21.96 wind 5.0 90 < th dose independent rect. 17 11
30 22.00 atmosphere 995.0 90 > th dose independent rect. 8 20
34 22.03 temperature 10.0 90 > th dose dependent rect. 8 20
37 22.05 temperature 15.0 90 > th dose independent rect. 8 20
39 22.08 temperature 15.0 90 > th dose independent rect. 17 11
45 22.12 wind 9.0 90 < th dose dependent rect. 17 11
50 22.15 atmosphere 995.0 90 > th dose independent rect. 17 11
52 22.16 precipitation 0.1 90 < th dose independent rect. 17 11
53 22.16 radiation 1.0 270 < th dose dependent rect. 3 7
56 22.16 precipitation 0.1 90 < th dose dependent rect. 17 11
64 22.21 radiation 10.0 90 < th dose independent rect. 17 11
66 22.21 radiation 30.0 90 < th dose dependent rect. 17 11
68 22.22 wind 7.0 90 < th dose independent rect. 8 20
72 22.23 radiation 1.0 270 < th dose dependent rect. 4 2
78 22.26 precipitation 0.1 270 < th dose independent rect. 5 23
81 22.26 precipitation 0.1 270 < th dose dependent rect. 5 23
86 22.27 temperature 10.0 90 > th dose independent rect. 4 13
87 22.27 atmosphere 1015.0 90 < th dose independent rect. 4 13
90 22.27 temperature 15.0 270 > th dose independent rect. 5 23
91 22.27 humidity 70.0 270 > th dose dependent rect. 4 1
98 22.28 wind 9.0 90 < th dose dependent rect. 8 20
99 22.29 atmosphere 1015.0 90 < th dose independent rect. 8 20
107 22.31 atmosphere 1010.0 90 < th dose independent rect. 4 3
108 22.31 humidity 90.0 270 < th dose independent rect. 23 12
110 22.31 precipitation 0.1 90 < th dose independent rect. 8 20
114 22.31 precipitation 0.1 90 < th dose dependent rect. 8 20
115 22.32 humidity 80.0 270 > th dose independent rect. 4 1
116 22.32 wind 9.0 270 < th dose dependent rect. 4 1
118 22.32 wind 9.0 90 < th dose dependent rect. 4 4
119 22.32 humidity 50.0 90 > th dose dependent rect. 4 4
120 22.33 radiation 1.0 43200 > th dose independent rect. 13 1
121 22.33 radiation 1.0 43200 < th dose independent rect. 13 1
123 22.33 radiation 1.0 270 < th dose independent rect. 3 7
126 22.33 wind 9.0 270 < th dose independent rect. 5 23
128 22.33 radiation 1.0 43200 < th dose dependent rect. 13 1
131 22.33 wind 1.0 14400 < th dose dependent rect. 22 4
136 22.35 wind 9.0 90 < th dose independent rect. 4 13
139 22.35 radiation 20.0 90 < th dose dependent rect. 11 17
140 22.36 wind 9.0 270 < th dose independent rect. 4 1
141 22.36 temperature 10.0 270 > th dose independent rect. 4 1
143 22.36 temperature 30.0 270 < th dose independent rect. 4 1
144 22.36 humidity 50.0 270 > th dose independent rect. 4 1
147 22.36 atmosphere 995.0 270 > th dose independent rect. 4 1
148 22.36 atmosphere 1010.0 270 < th dose independent rect. 4 1
150 22.36 radiation 20.0 270 < th dose independent rect. 4 1
158 22.36 radiation 20.0 270 < th dose dependent rect. 4 1
167 22.37 radiation 1.0 270 < th dose independent rect. 4 1
169 22.37 precipitation 0.1 270 < th dose independent rect. 4 1
176 22.37 precipitation 0.1 270 < th dose dependent rect. 4 1
179 22.37 radiation 20.0 90 < th dose dependent rect. 13 15
181 22.38 humidity 50.0 90 > th dose independent rect. 17 11
182 22.38 precipitation 0.1 90 < th dose independent rect. 4 13
184 22.38 precipitation 0.1 90 < th dose dependent rect. 4 13
192 22.39 temperature 10.0 270 > th dose dependent rect. 22 13
193 22.40 wind 7.0 90 < th dose independent rect. 4 4
195 22.40 temperature 10.0 90 > th dose independent rect. 4 4
197 22.40 temperature 30.0 90 < th dose independent rect. 4 4
198 22.40 humidity 50.0 90 > th dose independent rect. 4 4
200 22.40 atmosphere 995.0 90 > th dose independent rect. 4 4
211 22.41 precipitation 0.1 90 < th dose independent rect. 4 4
217 22.41 temperature 30.0 90 < th dose dependent rect. 4 3
219 22.41 precipitation 0.1 90 < th dose dependent rect. 4 4
223 22.42 radiation 40.0 90 < th dose independent rect. 4 4
225 22.42 atmosphere 1015.0 90 < th dose independent rect. 17 11
232 22.42 temperature 30.0 30 < th dose dependent rect. 4 5
243 22.44 radiation 1.0 270 < th dose independent rect. 3 3
247 22.44 atmosphere 995.0 43200 > th dose independent rect. 18 18
251 22.44 radiation 40.0 90 < th dose dependent rect. 4 4
254 22.44 radiation 20.0 90 < th dose dependent rect. 15 13
260 22.45 radiation 10.0 90 < th dose independent rect. 13 15
286 22.46 atmosphere 995.0 43200 < th dose independent rect. 18 18
304 22.48 radiation 30.0 270 < th dose independent rect. 15 11
305 22.48 radiation 10.0 90 < th dose independent rect. 15 13
306 22.48 wind 3.0 14400 < th dose dependent rect. 21 1
307 22.48 temperature 30.0 270 < th dose dependent rect. 4 1
314 22.49 wind 3.0 270 < th dose independent rect. 4 1
386 22.52 atmosphere 995.0 43200 > th dose independent rect. 21 16
396 22.52 temperature 15.0 270 > th dose dependent rect. 7 4
399 22.52 atmosphere 995.0 43200 < th dose dependent rect. 16 17
401 22.53 atmosphere 995.0 43200 > th dose independent sin 7 NA
426 22.54 atmosphere 995.0 43200 < th dose independent rect. 21 18
438 22.55 atmosphere 995.0 43200 < th dose independent sin 7 NA
448 22.55 radiation 20.0 43200 < th dose dependent rect. 8 1
465 22.56 humidity 90.0 90 > th dose dependent rect. 4 21
480 22.57 atmosphere 995.0 43200 < th dose independent rect. 21 14
495 22.57 atmosphere 995.0 43200 < th dose dependent rect. 18 5
505 22.57 atmosphere 995.0 43200 < th dose dependent rect. 13 20
507 22.58 radiation 20.0 43200 < th dose independent rect. 10 1
508 22.58 precipitation 0.1 43200 > th dose independent rect. 10 2
523 22.58 temperature 15.0 270 > th dose dependent rect. 8 2
525 22.58 precipitation 0.1 43200 > th dose dependent rect. 10 2
527 22.58 atmosphere 1015.0 90 < th dose dependent rect. 4 3
535 22.58 atmosphere 995.0 43200 < th dose dependent rect. 11 18
555 22.59 radiation 20.0 43200 > th dose independent rect. 9 2
570 22.59 radiation 40.0 270 < th dose independent rect. 6 21
572 22.59 atmosphere 995.0 43200 < th dose dependent sin 10 NA
650 22.62 wind 1.0 1440 < th dose independent rect. 11 1
651 22.62 atmosphere 995.0 43200 > th dose independent rect. 21 1
654 22.62 atmosphere 995.0 43200 < th dose independent rect. 21 1
684 22.62 humidity 90.0 270 < th dose independent rect. 6 5
695 22.62 atmosphere 995.0 43200 < th dose dependent rect. 21 1
715 22.62 atmosphere 995.0 43200 < th dose dependent rect. 22 11
731 22.63 precipitation 0.1 43200 < th dose independent rect. 10 2
733 22.63 atmosphere 995.0 43200 > th dose independent rect. 5 3
751 22.63 precipitation 0.1 43200 < th dose dependent rect. 10 2
769 22.64 wind 1.0 1440 > th dose independent rect. 11 1
780 22.64 atmosphere 1015.0 270 < th dose dependent rect. 7 4
788 22.64 humidity 90.0 90 > th dose dependent rect. 4 19
811 22.65 humidity 50.0 14400 > th dose independent rect. 19 10
819 22.65 atmosphere 1015.0 270 < th dose dependent rect. 9 1
880 22.67 atmosphere 995.0 43200 > th dose independent rect. 4 5
897 22.67 humidity 90.0 43200 > th dose dependent rect. 10 1
902 22.67 radiation 20.0 43200 < th dose dependent rect. 8 6
929 22.68 precipitation 0.1 1440 < th dose independent rect. 9 4
930 22.68 wind 9.0 1440 < th dose independent rect. 5 5
937 22.68 atmosphere 995.0 43200 > th dose independent rect. 2 8
950 22.68 atmosphere 995.0 43200 < th dose dependent no NA NA
951 22.68 atmosphere 1015.0 270 < th dose dependent rect. 4 1
956 22.68 precipitation 0.1 1440 < th dose dependent rect. 9 4
967 22.68 atmosphere 995.0 43200 < th dose dependent rect. 21 20
978 22.68 atmosphere 995.0 43200 < th dose dependent rect. 17 23
983 22.69 humidity 90.0 43200 > th dose independent rect. 12 1
984 22.69 humidity 70.0 43200 > th dose independent rect. 18 1
988 22.69 radiation 10.0 43200 > th dose independent rect. 6 3