BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0474400 Os05g0474400|AK060006
         (220 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0474400  Prenylated rab acceptor PRA1 family protein         238   3e-63
Os01g0827400  Prenylated rab acceptor PRA1 family protein         153   1e-37
Os11g0107600  Prenylated rab acceptor PRA1 family protein         121   5e-28
Os12g0107600  Prenylated rab acceptor PRA1 family protein         116   1e-26

>Os05g0474400 Prenylated rab acceptor PRA1 family protein
          Length = 220

 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 131/189 (69%)

Query: 32  DAPIATPAFRLFXXXXXXXXXXXXXXXXPWTELVDRSAFSRPDSLSDATSRLRRNLAYFR 91
           DAPIATPAFRLF                PWTELVDRSAFSRPDSLSDATSRLRRNLAYFR
Sbjct: 32  DAPIATPAFRLFLSKLSDSARRSLSDRRPWTELVDRSAFSRPDSLSDATSRLRRNLAYFR 91

Query: 92  VNYAAVVAFALGASLLAHPFSXXXXXXXXXXXXXXXXFRGSDQPVVLFGRTFSDRETXXX 151
           VNYAAVVAFALGASLLAHPFS                FRGSDQPVVLFGRTFSDRET   
Sbjct: 92  VNYAAVVAFALGASLLAHPFSLLVLLGLLAAWCFLYLFRGSDQPVVLFGRTFSDRETLLG 151

Query: 152 XXXXXXXXXXXXXXXXXIISGLLVGGAIVAVHGACRMPEDLFLXXXXXXSGNSAAQGLLS 211
                            IISGLLVGGAIVAVHGACRMPEDLFL      SGNSAAQGLLS
Sbjct: 152 LVVASFVAFFFTSVASLIISGLLVGGAIVAVHGACRMPEDLFLDDADAASGNSAAQGLLS 211

Query: 212 FLGAPGSRV 220
           FLGAPGSRV
Sbjct: 212 FLGAPGSRV 220



>Os01g0827400 Prenylated rab acceptor PRA1 family protein
          Length = 145

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 93/145 (64%)

Query: 76  LSDATSRLRRNLAYFRVNYAAVVAFALGASLLAHPFSXXXXXXXXXXXXXXXXFRGSDQP 135
           LS+ATSRLRRNLAYFRVNYAAVVAF+L ASLLAHPFS                FR +DQP
Sbjct: 1   LSEATSRLRRNLAYFRVNYAAVVAFSLAASLLAHPFSLLVLLAILGGWCFLYVFRAADQP 60

Query: 136 VVLFGRTFSDRETXXXXXXXXXXXXXXXXXXXXIISGLLVGGAIVAVHGACRMPEDLFLX 195
           VVLFGRTF+DRET                    IISGLLVGGAIVAVHGA R+PEDLFL 
Sbjct: 61  VVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFLD 120

Query: 196 XXXXXSGNSAAQGLLSFLGAPGSRV 220
                S  +    LLSFLGAPGS V
Sbjct: 121 DPSVGSNGNTTSRLLSFLGAPGSGV 145



>Os11g0107600 Prenylated rab acceptor PRA1 family protein
          Length = 257

 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 60  PWTELVDRSAFSRPDSLSDATSRLRRNLAYFRVNYAAVVAFALGASLLAHPFSXXXXXXX 119
           PW EL+DRSA SRP+SLSDA +RLR+NLAYFRVNYAA+VA +L A+LLAHPFS       
Sbjct: 59  PWPELIDRSALSRPESLSDAGARLRKNLAYFRVNYAAIVALSLAATLLAHPFSLAALLAL 118

Query: 120 XXXXXXXXXFRGSDQ-PVVLFGRTFSDRETXXXXXXXXXXXXXXXXXXXXIISGLLVGGA 178
                     R SD  P+  FGRTFSDRET                    I S L +G A
Sbjct: 119 LAAWCFLYLLRPSDAPPLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAA 178

Query: 179 IVAVHGACRMPEDLFLXXXXXXSGNSAAQGLLSFL 213
           IV  HGA R+PEDLFL      +G +A+  LLSF+
Sbjct: 179 IVCAHGAFRIPEDLFLDEPDQANG-AASVNLLSFI 212



>Os12g0107600 Prenylated rab acceptor PRA1 family protein
          Length = 220

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 94/163 (57%), Gaps = 3/163 (1%)

Query: 60  PWTELVDRSAFSRPDSLSDATSRLRRNLAYFRVNYAAVVAFALGASLLAHPFSXXXXXXX 119
           PW EL+DRSA S  +SLSD+ +RLR+NLAYFRVNYAA+VA +L ASLLAHPFS       
Sbjct: 59  PWPELIDRSALSHSESLSDSGARLRKNLAYFRVNYAAIVALSLAASLLAHPFSLAALLAL 118

Query: 120 XXXXXXXXXFRGSDQ-PVVLFGRTFSDRETXXXXXXXXXXXXXXXXXXXXIISGLLVGGA 178
                     R SD  P+  FGRTFSDRET                    I S L +G A
Sbjct: 119 LAAWCFLYLLRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAA 178

Query: 179 IVAVHGACRMPEDLFLXXXXXXSGNSAAQGLLSFL-GAPGSRV 220
           IV  HGA R+PEDLFL      +G +A+  LLSF+  A G RV
Sbjct: 179 IVCAHGAFRIPEDLFLDEPDQANG-AASVNLLSFITSATGGRV 220



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,199,128
Number of extensions: 105603
Number of successful extensions: 262
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 6
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)