Os12g0107600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prenylated rab acceptor PRA1 family protein.
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Os12g0107600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prenylated rab acceptor PRA1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.7 | 0.501 | 7.35 | 0.697 | 0.292 | 2.18 | 0.171 | 0.424 | -0.193 | 11 | 25.38 | 751 | -- | -- |
| 113.87 | 0.497 | 7.34 | 0.771 | 0.281 | 2.14 | 0.272 | -- | -0.172 | 10.9 | 25.64 | 760 | -- | -- |
| 113.78 | 0.497 | 7.35 | 0.691 | 0.284 | 2.19 | -- | 0.5 | -0.189 | 11.5 | 25.49 | 740 | -- | -- |
| 114.09 | 0.497 | 7.34 | 0.778 | 0.283 | 2.14 | -- | -- | -0.169 | 11.6 | 25.7 | 736 | -- | -- |
| 117.66 | 0.505 | 7.35 | 0.748 | -- | 2.33 | -- | 0.411 | -0.143 | -- | 26.38 | 809 | -- | -- |
| 181.99 | 0.632 | 7.44 | 0.166 | 0.621 | -- | 0.234 | -- | -0.636 | 10.6 | -- | -- | -- | -- |
| 182.21 | 0.632 | 7.44 | 0.176 | 0.62 | -- | -- | -- | -0.635 | 10.7 | -- | -- | -- | -- |
| 117.86 | 0.506 | 7.34 | 0.832 | -- | 2.31 | -- | -- | -0.123 | -- | 26.46 | 809 | -- | -- |
| 129.4 | 0.53 | 7.35 | -- | 0.345 | 1.9 | -- | -- | -0.211 | 10.3 | 25.53 | 764 | -- | -- |
| 205.89 | 0.67 | 7.46 | 0.164 | -- | -- | -- | -- | -0.639 | -- | -- | -- | -- | -- |
| 183.02 | 0.633 | 7.44 | -- | 0.618 | -- | -- | -- | -0.655 | 10.7 | -- | -- | -- | -- |
| 133.83 | 0.539 | 7.37 | -- | -- | 1.97 | -- | -- | -0.282 | -- | 26.38 | 770 | -- | -- |
| 206.6 | 0.671 | 7.46 | -- | -- | -- | -- | -- | -0.657 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 3 | 108.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 27 | 109.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 36 | 109.84 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 39 | 109.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 142 | 110.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 181 | 110.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 301 | 111.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 396 | 111.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 415 | 111.75 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 470 | 112.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 723 | 113.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 888 | 113.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 903 | 113.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 910 | 113.78 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 940 | 113.87 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |