BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0107600 Os12g0107600|Os12g0107600
(220 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38360.1 | chr2:16069840-16070502 REVERSE LENGTH=221 146 8e-36
AT3G56110.1 | chr3:20822228-20822857 REVERSE LENGTH=210 143 6e-35
AT5G01640.1 | chr5:241442-242113 REVERSE LENGTH=224 142 9e-35
AT5G05380.1 | chr5:1592214-1592867 FORWARD LENGTH=218 131 3e-31
AT2G40380.1 | chr2:16864734-16865375 REVERSE LENGTH=214 126 8e-30
AT5G07110.1 | chr5:2206121-2206771 FORWARD LENGTH=217 105 2e-23
AT1G55190.1 | chr1:20588450-20589019 FORWARD LENGTH=190 64 7e-11
AT4G00005.1 | chr4:1180-1536 REVERSE LENGTH=119 63 2e-10
>AT2G38360.1 | chr2:16069840-16070502 REVERSE LENGTH=221
Length = 220
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 115/215 (53%), Gaps = 14/215 (6%)
Query: 1 MAAASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAAT---RAFLARLLDSVKRALSGA 57
MA+++PP+LP + N S AP+SV S P AT R F+ ++ ++VK LS
Sbjct: 1 MASSAPPVLPIS----NPQTVPSAAPSSVESQ--PPIATPAFRNFINQITETVKNGLSKR 54
Query: 58 RPWPELIDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXX 117
RPW EL DR R+RKN +YF+VNY
Sbjct: 55 RPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLC 114
Query: 118 XXXXXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGA 177
RP+D P + FGRTFSDRETLG LI+ S FVIFLT VGS++ SA+ +G
Sbjct: 115 LLASWLFLYLFRPTDQP-IVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGV 173
Query: 178 AIVCAHGAFRIPEDLFLDEPDQANGAASVNLLSFI 212
A++CAHGAFR PEDLFLDE + A+ LSF+
Sbjct: 174 ALICAHGAFRAPEDLFLDEQE----PAATGFLSFL 204
>AT3G56110.1 | chr3:20822228-20822857 REVERSE LENGTH=210
Length = 209
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 108/209 (51%), Gaps = 16/209 (7%)
Query: 4 ASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPWPEL 63
A+PP LP T N A S P + A R F +RL S++ LS RPW EL
Sbjct: 2 ATPPTLPVT----NQQAVQSQPPINT-------PAFRTFFSRLSTSIRDGLSQRRPWTEL 50
Query: 64 IDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123
IDR +R+RKNLAYF+VNY
Sbjct: 51 IDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWM 110
Query: 124 XXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIVCAH 183
RPSD P L FGRTFSDRETL L++++ V+F+TSVGSL+ SAL +G AIVC H
Sbjct: 111 FLYLFRPSDQP-LVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVH 169
Query: 184 GAFRIPEDLFLDEPDQANGAASVNLLSFI 212
GAF +P+DLFLDE + AN LLSF+
Sbjct: 170 GAFVVPDDLFLDEQEPANAG----LLSFL 194
>AT5G01640.1 | chr5:241442-242113 REVERSE LENGTH=224
Length = 223
Score = 142 bits (359), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 110/212 (51%), Gaps = 8/212 (3%)
Query: 1 MAAASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPW 60
M + +PP+LP + +TT + P + +++P RAF+ + ++V LS +RPW
Sbjct: 1 MVSTNPPVLPISTTATDTT---NQPPIVTAVVESQPPVVRAFVNGVTETVCGGLSRSRPW 57
Query: 61 PELIDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
EL+DR G R RKN +YFRVNY
Sbjct: 58 SELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAA 117
Query: 121 XXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIV 180
RPSD P L FGR+FS+ ETLGGLI+++ VIF TSVGS++ SAL +G A +
Sbjct: 118 SWLFLYLFRPSDRP-LILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATI 176
Query: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFI 212
C HGAFR P+DLFLDE D A LSFI
Sbjct: 177 CVHGAFRAPDDLFLDEQDHAASG----FLSFI 204
>AT5G05380.1 | chr5:1592214-1592867 FORWARD LENGTH=218
Length = 217
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 108/209 (51%), Gaps = 14/209 (6%)
Query: 4 ASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPWPEL 63
A+PP LP + + + P T A R FL+RL S++++LS RPW EL
Sbjct: 3 ANPPTLPISDHSGGGSQSQQPVST---------PAFRTFLSRLSSSIRQSLSQRRPWLEL 53
Query: 64 IDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123
+DR +R+R+NL YF+VNY
Sbjct: 54 VDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWI 113
Query: 124 XXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIVCAH 183
RPSD P L GRTFSDRETLG L++ + V+FLTSVGSL+ SAL +G IVC H
Sbjct: 114 FLYLFRPSDQP-LVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLH 172
Query: 184 GAFRIPEDLFLDEPDQANGAASVNLLSFI 212
GAFR+PEDLFLD+ + AN LLSF+
Sbjct: 173 GAFRVPEDLFLDDQEPAN----TGLLSFL 197
>AT2G40380.1 | chr2:16864734-16865375 REVERSE LENGTH=214
Length = 213
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 111/210 (52%), Gaps = 15/210 (7%)
Query: 3 AASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPWPE 62
++SP +LP T AT S P + A R FL+RL S++ +LS RPW E
Sbjct: 2 SSSPAILPVT---NQQAATQSQPPIN-------SHAFRTFLSRLSSSLRESLSQRRPWLE 51
Query: 63 LIDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
L+DR +R+RKNLAYF+VNY
Sbjct: 52 LVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSW 111
Query: 123 XXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIVCA 182
R SD P L FGR+FSDRETL GL++ + V+F+TSVGSL+ SAL +G AIVC
Sbjct: 112 MFLYLFRSSDQP-LVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCL 170
Query: 183 HGAFRIPEDLFLDEPDQANGAASVNLLSFI 212
HGAFR+P+DLFLDE + AN LLSFI
Sbjct: 171 HGAFRVPDDLFLDEQEPANAG----LLSFI 196
>AT5G07110.1 | chr5:2206121-2206771 FORWARD LENGTH=217
Length = 216
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 49 SVKRALSGARPWPELIDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXXXXXXXXXXXXX 108
+V+ A + ARPW EL+DR +R+RKN +YFR NY
Sbjct: 36 TVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTH 95
Query: 109 XXXXXXXXXXXXXXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSL 168
RP+D P L GRTFSD ETLG L +++ V+F+TSVGSL
Sbjct: 96 PFALFLLASLAASWLFLYFFRPADQP-LVIGGRTFSDLETLGILCLSTVVVMFMTSVGSL 154
Query: 169 IFSALALGAAIVCAHGAFRIPEDLFLDEPD 198
+ S LA+G V HGAFR PEDLFL+E +
Sbjct: 155 LMSTLAVGIMGVAIHGAFRAPEDLFLEEQE 184
>AT1G55190.1 | chr1:20588450-20589019 FORWARD LENGTH=190
Length = 189
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 69/182 (37%), Gaps = 4/182 (2%)
Query: 30 SSADAKPAATRAFLARLLDSVKRALSGARPWPELIDRXXXXXXXXXXXXGARLRKNLAYF 89
+S+ PA +++R +K L+ RPW + D +R++ NL YF
Sbjct: 9 TSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYF 68
Query: 90 RVNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSDAPPLAAFGRTFSDRETL 149
R NY R PL FG DR L
Sbjct: 69 RANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDE---PLVVFGYQIDDRTVL 125
Query: 150 GGLIVASAFVIFLTSVGSLIFSALALGAAIVCAHGAFRIPEDLFLDEPDQANGAASVNLL 209
GL V + ++ LT S I +L A +V H A R ++LFLDE A AS L+
Sbjct: 126 IGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEAS-GLM 184
Query: 210 SF 211
S+
Sbjct: 185 SY 186
>AT4G00005.1 | chr4:1180-1536 REVERSE LENGTH=119
Length = 118
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 81 RLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSDAPPLAAFG 140
R KN +YFRVNY RPSD P L G
Sbjct: 3 RFWKNSSYFRVNYVCIIALIISFSLPAHPFSLILLLCLAASWLFLYLFRPSDRP-LILIG 61
Query: 141 RTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALG 176
R+FS+ ETLGGLI+++ VIF TSVGS++ SAL +G
Sbjct: 62 RSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIG 97
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,259,828
Number of extensions: 98518
Number of successful extensions: 509
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 8
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)