BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0107600 Os12g0107600|Os12g0107600
         (220 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0107600  Prenylated rab acceptor PRA1 family protein         319   1e-87
Os11g0107600  Prenylated rab acceptor PRA1 family protein         310   4e-85
Os05g0474400  Prenylated rab acceptor PRA1 family protein         135   2e-32
Os01g0827400  Prenylated rab acceptor PRA1 family protein         109   2e-24

>Os12g0107600 Prenylated rab acceptor PRA1 family protein
          Length = 220

 Score =  319 bits (817), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/220 (78%), Positives = 173/220 (78%)

Query: 1   MAAASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPW 60
           MAAASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPW
Sbjct: 1   MAAASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPW 60

Query: 61  PELIDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           PELIDR            GARLRKNLAYFRVNY                           
Sbjct: 61  PELIDRSALSHSESLSDSGARLRKNLAYFRVNYAAIVALSLAASLLAHPFSLAALLALLA 120

Query: 121 XXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIV 180
                   RPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIV
Sbjct: 121 AWCFLYLLRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIV 180

Query: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGRV 220
           CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGRV
Sbjct: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGRV 220



>Os11g0107600 Prenylated rab acceptor PRA1 family protein
          Length = 257

 Score =  310 bits (795), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 169/219 (77%), Positives = 170/219 (77%)

Query: 1   MAAASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAATRAFLARLLDSVKRALSGARPW 60
           MAAASPPLLPTTVLPAN TATVSPAPTSVSSADA PAATRAFLARLLDSVKRALSGARPW
Sbjct: 1   MAAASPPLLPTTVLPANATATVSPAPTSVSSADANPAATRAFLARLLDSVKRALSGARPW 60

Query: 61  PELIDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           PELIDR            GARLRKNLAYFRVNY                           
Sbjct: 61  PELIDRSALSRPESLSDAGARLRKNLAYFRVNYAAIVALSLAATLLAHPFSLAALLALLA 120

Query: 121 XXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIV 180
                   RPSDAPPLAAFGRTFSDRETLGGLIVASAFV+FLTSVGSLIFSALALGAAIV
Sbjct: 121 AWCFLYLLRPSDAPPLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAAIV 180

Query: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGR 219
           CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGR
Sbjct: 181 CAHGAFRIPEDLFLDEPDQANGAASVNLLSFITSATGGR 219



>Os05g0474400 Prenylated rab acceptor PRA1 family protein
          Length = 220

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 101/184 (54%), Gaps = 3/184 (1%)

Query: 38  ATRAFLARLLDSVKRALSGARPWPELIDRXXXXXXXXXXXXGARLRKNLAYFRVNYXXXX 97
           A R FL++L DS +R+LS  RPW EL+DR             +RLR+NLAYFRVNY    
Sbjct: 39  AFRLFLSKLSDSARRSLSDRRPWTELVDRSAFSRPDSLSDATSRLRRNLAYFRVNYAAVV 98

Query: 98  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSDAPPLAAFGRTFSDRETLGGLIVASA 157
                                          R SD  P+  FGRTFSDRETL GL+VAS 
Sbjct: 99  AFALGASLLAHPFSLLVLLGLLAAWCFLYLFRGSD-QPVVLFGRTFSDRETLLGLVVASF 157

Query: 158 FVIFLTSVGSLIFSALALGAAIVCAHGAFRIPEDLFLDEPDQANG-AASVNLLSFITSAT 216
              F TSV SLI S L +G AIV  HGA R+PEDLFLD+ D A+G +A+  LLSF+  A 
Sbjct: 158 VAFFFTSVASLIISGLLVGGAIVAVHGACRMPEDLFLDDADAASGNSAAQGLLSFL-GAP 216

Query: 217 GGRV 220
           G RV
Sbjct: 217 GSRV 220



>Os01g0827400 Prenylated rab acceptor PRA1 family protein
          Length = 145

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 75/134 (55%), Gaps = 2/134 (1%)

Query: 80  ARLRKNLAYFRVNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSDAPPLAAF 139
           +RLR+NLAYFRVNY                                   R +D  P+  F
Sbjct: 6   SRLRRNLAYFRVNYAAVVAFSLAASLLAHPFSLLVLLAILGGWCFLYVFRAAD-QPVVLF 64

Query: 140 GRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIVCAHGAFRIPEDLFLDEPD- 198
           GRTF+DRETL GL+VAS    F+TSV SLI S L +G AIV  HGAFR+PEDLFLD+P  
Sbjct: 65  GRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFLDDPSV 124

Query: 199 QANGAASVNLLSFI 212
            +NG  +  LLSF+
Sbjct: 125 GSNGNTTSRLLSFL 138



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,773,640
Number of extensions: 196898
Number of successful extensions: 1526
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1520
Number of HSP's successfully gapped: 6
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)