Os03g0798400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prenylated rab acceptor PRA1 family protein.
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Os03g0798400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prenylated rab acceptor PRA1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.79 | 0.277 | 10.9 | -0.235 | 0.472 | -0.0761 | -0.156 | -1.17 | -0.159 | 8.74 | 10.02 | 288 | -- | -- |
| 37.79 | 0.286 | 10.9 | -0.138 | 0.435 | -0.234 | -0.541 | -- | -0.111 | 8.66 | 13.04 | 3201 | -- | -- |
| 34.87 | 0.275 | 10.9 | -0.236 | 0.476 | -0.0747 | -- | -1.22 | -0.16 | 8.71 | 10.02 | 287 | -- | -- |
| 38.38 | 0.289 | 10.9 | -0.196 | 0.458 | -0.246 | -- | -- | -0.131 | 8.05 | 14.43 | 3006 | -- | -- |
| 42.65 | 0.304 | 10.9 | -0.00726 | -- | -0.568 | -- | -0.583 | -0.111 | -- | 2.537 | 915 | -- | -- |
| 39.63 | 0.295 | 10.9 | -0.198 | 0.468 | -- | -0.53 | -- | -0.146 | 8.49 | -- | -- | -- | -- |
| 40.33 | 0.297 | 10.9 | -0.218 | 0.478 | -- | -- | -- | -0.147 | 8.03 | -- | -- | -- | -- |
| 41.21 | 0.299 | 10.9 | -0.15 | -- | -0.571 | -- | -- | -0.07 | -- | 3.48 | 932 | -- | -- |
| 39.17 | 0.291 | 10.9 | -- | 0.467 | -0.289 | -- | -- | -0.0966 | 8.09 | 13.09 | 3011 | -- | -- |
| 52.82 | 0.34 | 10.9 | -0.213 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 41.58 | 0.302 | 10.9 | -- | 0.476 | -- | -- | -- | -0.123 | 8.06 | -- | -- | -- | -- |
| 41.75 | 0.301 | 10.9 | -- | -- | -0.658 | -- | -- | -0.0868 | -- | 2.918 | 932 | -- | -- |
| 54.01 | 0.343 | 10.9 | -- | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.73 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 5 | 33.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 6 | 33.94 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 8 |
| 7 | 33.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 16 | 34.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 23 | 34.07 | humidity | 90 | 270 | < th | dose independent | sin | 2 | NA |
| 28 | 34.10 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 32 | 34.11 | temperature | 15 | 90 | > th | dose dependent | sin | 1 | NA |
| 53 | 34.22 | humidity | 90 | 270 | < th | dose independent | rect. | 3 | 12 |
| 73 | 34.27 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 10 |
| 76 | 34.27 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 12 |
| 88 | 34.28 | humidity | 80 | 270 | < th | dose independent | rect. | 23 | 17 |
| 97 | 34.29 | humidity | 60 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 106 | 34.31 | humidity | 80 | 90 | < th | dose independent | rect. | 21 | 21 |
| 110 | 34.32 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 121 | 34.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 16 |
| 147 | 34.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 175 | 34.41 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 14 |
| 270 | 34.51 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 368 | 34.60 | humidity | 90 | 10 | < th | dose independent | sin | 0 | NA |
| 470 | 34.67 | humidity | 60 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 525 | 34.71 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 565 | 34.74 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 568 | 34.75 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 600 | 34.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 609 | 34.78 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 11 |
| 632 | 34.78 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 22 |
| 633 | 34.78 | humidity | 60 | 90 | > th | dose dependent | rect. | 15 | 22 |
| 648 | 34.79 | temperature | 10 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 650 | 34.80 | humidity | 80 | 270 | > th | dose independent | sin | 7 | NA |
| 657 | 34.80 | radiation | 1 | 720 | < th | dose dependent | sin | 7 | NA |
| 680 | 34.81 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 688 | 34.81 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 689 | 34.81 | radiation | 20 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 691 | 34.82 | radiation | 10 | 270 | > th | dose independent | sin | 0 | NA |
| 733 | 34.83 | radiation | 1 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 735 | 34.84 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 814 | 34.84 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 23 |
| 822 | 34.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 827 | 34.84 | humidity | 60 | 90 | > th | dose dependent | rect. | 18 | 19 |
| 833 | 34.84 | radiation | 1 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 887 | 34.86 | radiation | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 895 | 34.87 | humidity | 80 | 30 | < th | dose independent | rect. | 17 | 23 |
| 897 | 34.87 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 23 |
| 906 | 34.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 935 | 34.88 | humidity | 60 | 90 | > th | dose dependent | no | NA | NA |
| 937 | 34.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 962 | 34.89 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 18 |
| 969 | 34.89 | humidity | 70 | 270 | > th | dose dependent | sin | 6 | NA |
| 972 | 34.89 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 11 |