BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0578600 Os10g0578600|AK119822
(395 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0578600 Conserved hypothetical protein 667 0.0
Os06g0474300 Methyltransferase type 11 domain containing pr... 156 3e-38
Os04g0444700 SAM (and some other nucleotide) binding motif ... 140 1e-33
Os06g0138500 Conserved hypothetical protein 125 6e-29
Os08g0113400 Methyltransferase type 11 domain containing pr... 121 9e-28
>Os10g0578600 Conserved hypothetical protein
Length = 395
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/395 (86%), Positives = 343/395 (86%)
Query: 1 ADSHLDGVPAMRKTTVSSSSSLNIAFLLSMVATNLLSLYHLSTRASTXXXXXXXXXXXXX 60
ADSHLDGVPAMRKTTVSSSSSLNIAFLLSMVATNLLSLYHLSTRAST
Sbjct: 1 ADSHLDGVPAMRKTTVSSSSSLNIAFLLSMVATNLLSLYHLSTRASTAPPLLLPAAHQAQ 60
Query: 61 XXDEQLLRQLTAIRATVSQLNHLRSSTXXXXXXXXELLLYSRLAPLASACSAHPDLLHRF 120
DEQLLRQLTAIRATVSQLNHLRSST ELLLYSRLAPLASACSAHPDLLHRF
Sbjct: 61 AQDEQLLRQLTAIRATVSQLNHLRSSTPPPPPPPPELLLYSRLAPLASACSAHPDLLHRF 120
Query: 121 MSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXXHNLNNLPTDPFSPLPDSA 180
MSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCF HNLNNLPTDPFSPLPDSA
Sbjct: 121 MSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFSSSSISSSHNLNNLPTDPFSPLPDSA 180
Query: 181 VRWPPGAKCTSFSCLPPSLGFDLARTEAARFLRAEGPLDLTVPQLLRLASLSRAGPIRXX 240
VRWPPGAKCTSFSCLPPSLGFDLARTEAARFLRAEGPLDLTVPQLLRLASLSRAGPIR
Sbjct: 181 VRWPPGAKCTSFSCLPPSLGFDLARTEAARFLRAEGPLDLTVPQLLRLASLSRAGPIRLG 240
Query: 241 XXXXXXXXXXAARLKRAANATVLTTTMNLGAPYSEAAAARGVVPLHAPLQQRFPVGDATM 300
AARLKRAANATVLTTTMNLGAPYSEAAAARGVVPLHAPLQQRFPVGDATM
Sbjct: 241 LDVGGGTGTLAARLKRAANATVLTTTMNLGAPYSEAAAARGVVPLHAPLQQRFPVGDATM 300
Query: 301 DLVRAGHAVNRWIPEAALEFLWYDADRVLRPRGLLWVDHFWCRRPDLAAVYQPMLRRLGY 360
DLVRAGHAVNRWIPEAALEFLWYDADRVLRPRGLLWVDHFWCRRPDLAAVYQPMLRRLGY
Sbjct: 301 DLVRAGHAVNRWIPEAALEFLWYDADRVLRPRGLLWVDHFWCRRPDLAAVYQPMLRRLGY 360
Query: 361 KTLKWAVADKXXXXXXXXXGAKHDHVYLTALLQKP 395
KTLKWAVADK GAKHDHVYLTALLQKP
Sbjct: 361 KTLKWAVADKTTPTPTAPPGAKHDHVYLTALLQKP 395
>Os06g0474300 Methyltransferase type 11 domain containing protein
Length = 480
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 147/303 (48%), Gaps = 30/303 (9%)
Query: 104 APLASACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXXH 163
+ AC L +MSY + CPDD L + L+L GC PLPRRRC
Sbjct: 194 GSIGHACVVMRRELDEYMSYDVGALCPDD-WDLGQRLMLGGCDPLPRRRCLARASKLFRR 252
Query: 164 NLNNLPTDPFSPLPDSA-VRWPPGAKCTSFSCLP---PSLG-------FDLARTEAARFL 212
L + LPD VRW C + CL P G FD+ R E R++
Sbjct: 253 PLP--INESLWALPDDGNVRWSR-YHCRGYRCLSARNPRRGYDRCVGCFDMDR-EKQRWM 308
Query: 213 RAEGPLDLTVPQLLRLASLSRAGPIRXXXXXXXXXXXXAARLKRAANATVLTTTMNLGAP 272
+ L ++ + ++ + G IR AAR+ R TV+TT +NLGAP
Sbjct: 309 QGSNGTTLADFRMEEVLAV-KPGEIRVGLDVTVGTGSFAARM-RERGVTVVTTAVNLGAP 366
Query: 273 YSEAAAARGVVPLHAPLQQRFPVGDATMDLVRAGHAVNRWIPEAALEFLWYDADRVLRPR 332
++E A RG+V L+A L QR P+ D +MD+V G ++ W+ L+F+ +D DRVLRP
Sbjct: 367 FAETVALRGLVALYAGLGQRLPLFDNSMDMVHTGGVLDGWVDLQMLDFVLFDWDRVLRPG 426
Query: 333 GLLWVDHFWCRRPDLAAVYQPMLRRLGYKTLKWAVADKXXXXXXXXXGAKHDHVYLTALL 392
GLLWVD F C R DL Y M + YK +W V+ K D VYL+ALL
Sbjct: 427 GLLWVDKFACARKDLDD-YMYMFLQFRYKKHRWVVSFK-----------SRDEVYLSALL 474
Query: 393 QKP 395
+KP
Sbjct: 475 EKP 477
>Os04g0444700 SAM (and some other nucleotide) binding motif domain containing
protein
Length = 448
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 154/304 (50%), Gaps = 31/304 (10%)
Query: 109 ACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXXHNLNNL 168
AC D L R+M+Y CPDDA +L L+L+GC PLPRRRC L
Sbjct: 157 ACRNFQDELARYMAYDAGGECPDDADALELQLILKGCEPLPRRRCRPRSPARYVEP-APL 215
Query: 169 PTDPFSPLPDSAVRWPPGAKCTSFSCLPPSLG--------------FDLA--RTEAARFL 212
P +S PD+ V W P A C +++CL FDLA E R++
Sbjct: 216 PGSLWSIPPDTTVNWSPYA-CKNYTCLVGRARARGGGGGSYECKDCFDLAAGGKERRRWM 274
Query: 213 RAEGPLDLTVPQLLRLASLSRA-GPIRXXXXXXXXXXXXAARLKRAANATVLTTTMNLGA 271
G ++ +L SRA G +R AAR+ R TV+TTT+++GA
Sbjct: 275 SDNGGPGFSIDGVLA----SRAPGTVRVGLDIGGGAGTFAARM-RERGVTVVTTTLDVGA 329
Query: 272 PYSEAAAARGVVPLHAPLQQRFPVGDATMDLVRAGHAVNRWIPEAALEFLWYDADRVLRP 331
P+S A+RG+VPL L QR P+ D MD+V A + W+P A LE +D RVLRP
Sbjct: 330 PFSAFVASRGLVPLQLSLAQRLPLADGVMDIVHA-MQLGGWVPGAVLELALFDVYRVLRP 388
Query: 332 RGLLWVDHFWCRRPDLAAVYQPMLRRLGYKTLKWAVADKXXXXXXXXXGAKHDHVYLTAL 391
G+ W+DHF C P L Y P+L R+G++ L+W + K GA+ + YL+AL
Sbjct: 389 GGVFWLDHFACVGPRLNDTYAPILDRVGFRRLRWKASRK------LDLGAERNEWYLSAL 442
Query: 392 LQKP 395
L+KP
Sbjct: 443 LEKP 446
>Os06g0138500 Conserved hypothetical protein
Length = 383
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 129/304 (42%), Gaps = 59/304 (19%)
Query: 104 APLASACSAHP---DLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXX 160
A +A +C P LL FMSY P + CP +A LL + C PLPRRRC
Sbjct: 124 ASVAHSCFRSPATLSLLAAFMSYDPHAACPRNATLQQHRLLSKACEPLPRRRC------- 176
Query: 161 XXHNLNNLPTDPFSPLPDSAVRWPPGAKCTSFSCLPPSLGFDLARTEAARFLRAEGPLDL 220
L P + LP S ++G D R++R +
Sbjct: 177 -------LSGGPRAALPAS------------------NMGVD-----GRRWVRPRHDYEF 206
Query: 221 TVPQLLRLASLSRAGPIRXXXXXXXXXXXXAARLKRAANATVLTTTMNLGAPYSEAAAAR 280
+ +LRL A IR AAR++ V T N G P +E AAR
Sbjct: 207 LLDDVLRLG----ATRIRIGLDVAGGAANFAARMRDRGVTVVTTVLDNAGKPMNEFVAAR 262
Query: 281 GVVPLHAPLQQRFPVGDATMDLVRAGH---------AVNRWIPEAALEFLWYDADRVLRP 331
G+ PL RFP D DLV G ++ E ALEF +D DRVLR
Sbjct: 263 GLFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAPSMGNSGTEEALEFFMFDVDRVLRV 322
Query: 332 RGLLWVDHFWCRRPDLAAVYQPMLRRLGYKTLKWAVADKXXXXXXXXXGAKHDHVYLTAL 391
GLLW+D + C+ + + +++R GYK LKW V +K G+ +YL+AL
Sbjct: 323 GGLLWIDSYLCQSEERRQLVVNLIKRFGYKKLKWMVGEK------AGTGSAKTALYLSAL 376
Query: 392 LQKP 395
LQKP
Sbjct: 377 LQKP 380
>Os08g0113400 Methyltransferase type 11 domain containing protein
Length = 419
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 14/269 (5%)
Query: 106 LASACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXXHNL 165
L AC+ D L +M YTP CP D LA L+L GC PLPRRRC
Sbjct: 150 LGHACARFQDDLEAYMRYTPGGECPSDE-QLARRLMLNGCDPLPRRRCRPRSPAGYVQP- 207
Query: 166 NNLPTDPFSPLPDSAVRWPPGAKCTSFSCLPPSLG---FDLARTEAARFLRAEGPLDLTV 222
+ L ++ PD+ V W +C ++SCL G FDL E R++R +G L ++
Sbjct: 208 SPLTKSLWAIPPDTTVVWDA-YRCKNYSCLVRGGGGGEFDLLGREKRRWMRDDGALAYSI 266
Query: 223 PQLLRLASLSRAGPIRXXXXXXXXXXXXAARLKRAANATVLTTTMNLGAPYSEAAAARGV 282
+L + G +R AAR+ R V TT MN G P A+RG+
Sbjct: 267 DSVL---AARPNGTVRIGLDIGGVSGTFAARM-RERGVAVATTAMNSGGPSGSLIASRGL 322
Query: 283 VPLHAPLQQRFPVGDATMDLVRAGHAVN-RWIPEAALEFLWYDADRVLRPRGLLWVDHFW 341
VP+H R P D T+D+V H + + LEF +D RVLRP GLLW+DHF
Sbjct: 323 VPVHVGPAHRLPFFDGTLDIV---HWTSPEHVAGVMLEFALFDIYRVLRPGGLLWLDHFV 379
Query: 342 CRRPDLAAVYQPMLRRLGYKTLKWAVADK 370
L A + PM+ R+G++ L+W K
Sbjct: 380 FPGEQLNATFAPMVDRVGFRRLRWNTGKK 408
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,762,128
Number of extensions: 467817
Number of successful extensions: 1018
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1004
Number of HSP's successfully gapped: 5
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)