Os04g0444700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os04g0444700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.41 | 0.641 | 6.67 | 3.02 | 0.552 | -2.22 | 0.501 | 0.284 | 0.241 | 7.55 | 22.1 | 3109 | -- | -- |
| 177.29 | 0.62 | 6.71 | 2.66 | 0.461 | -2.13 | 0.336 | -- | 0.151 | 7.66 | 22.15 | 1951 | -- | -- |
| 179.06 | 0.623 | 6.69 | 2.87 | 0.443 | -2.12 | -- | 0.59 | 0.175 | 7.91 | 22.29 | 2121 | -- | -- |
| 177.38 | 0.62 | 6.7 | 2.69 | 0.464 | -2.14 | -- | -- | 0.142 | 8.23 | 22.12 | 1940 | -- | -- |
| 188.25 | 0.639 | 6.71 | 2.77 | -- | -2.18 | -- | 0.113 | 0.182 | -- | 22.19 | 2079 | -- | -- |
| 340.93 | 0.866 | 6.87 | 1.82 | 0.558 | -- | 0.0359 | -- | -0.584 | 8.49 | -- | -- | -- | -- |
| 340.93 | 0.865 | 6.87 | 1.82 | 0.557 | -- | -- | -- | -0.584 | 8.53 | -- | -- | -- | -- |
| 188.28 | 0.639 | 6.71 | 2.74 | -- | -2.19 | -- | -- | 0.176 | -- | 22.2 | 2079 | -- | -- |
| 338.06 | 0.856 | 6.82 | -- | 0.452 | -1.49 | -- | -- | -0.159 | 7.27 | 22.4 | 1180 | -- | -- |
| 358.34 | 0.885 | 6.88 | 1.82 | -- | -- | -- | -- | -0.579 | -- | -- | -- | -- | -- |
| 428.16 | 0.968 | 6.91 | -- | 0.565 | -- | -- | -- | -0.787 | 8.29 | -- | -- | -- | -- |
| 339.92 | 0.859 | 6.83 | -- | -- | -1.43 | -- | -- | -0.341 | -- | 22.31 | 738 | -- | -- |
| 445.86 | 0.986 | 6.93 | -- | -- | -- | -- | -- | -0.781 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 2 | 183.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 18 | 184.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 28 | 184.63 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 37 | 184.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 85 | 185.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 99 | 185.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 399 | 191.04 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 596 | 193.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 632 | 193.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 693 | 193.73 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 829 | 194.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 875 | 195.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |