Os06g0138500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0138500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.64 | 0.537 | 4.21 | 0.345 | 0.515 | 1.79 | 0.163 | 0.97 | -0.367 | 9.49 | 23.1 | 651 | -- | -- |
| 131.66 | 0.534 | 4.19 | 0.465 | 0.524 | 1.66 | 0.375 | -- | -0.338 | 9.42 | 23.19 | 650 | -- | -- |
| 130.6 | 0.532 | 4.21 | 0.329 | 0.528 | 1.84 | -- | 1.15 | -0.375 | 9.8 | 23 | 577 | -- | -- |
| 132.12 | 0.535 | 4.19 | 0.468 | 0.527 | 1.63 | -- | -- | -0.346 | 9.63 | 23.2 | 638 | -- | -- |
| 145.29 | 0.561 | 4.22 | 0.36 | -- | 2.07 | -- | 1.3 | -0.336 | -- | 23.1 | 691 | -- | -- |
| 165.7 | 0.603 | 4.24 | 0.0442 | 0.695 | -- | 0.271 | -- | -0.609 | 9.5 | -- | -- | -- | -- |
| 165.96 | 0.603 | 4.24 | 0.0548 | 0.692 | -- | -- | -- | -0.608 | 9.58 | -- | -- | -- | -- |
| 147.33 | 0.565 | 4.19 | 0.538 | -- | 1.84 | -- | -- | -0.294 | -- | 23.4 | 707 | -- | -- |
| 137.39 | 0.546 | 4.2 | -- | 0.545 | 1.44 | -- | -- | -0.402 | 9.5 | 23.2 | 644 | -- | -- |
| 194.29 | 0.651 | 4.26 | 0.0495 | -- | -- | -- | -- | -0.606 | -- | -- | -- | -- | -- |
| 166.04 | 0.603 | 4.24 | -- | 0.692 | -- | -- | -- | -0.614 | 9.58 | -- | -- | -- | -- |
| 154.05 | 0.578 | 4.2 | -- | -- | 1.5 | -- | -- | -0.342 | -- | 25.17 | 722 | -- | -- |
| 194.35 | 0.651 | 4.26 | -- | -- | -- | -- | -- | -0.612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.45 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 2 | 128.64 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 3 | 128.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 6 | 129.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 7 | 129.20 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 8 | 129.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 26 | 130.08 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 31 | 130.20 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 45 | 130.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 66 | 130.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 77 | 131.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 95 | 131.41 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 17 |
| 134 | 131.79 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 169 | 132.14 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 22 |
| 196 | 132.37 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 228 | 132.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 291 | 133.02 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 366 | 133.53 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 373 | 133.58 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 374 | 133.58 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 13 |
| 427 | 133.93 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 438 | 134.01 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 456 | 134.12 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 460 | 134.13 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 474 | 134.21 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 508 | 134.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 545 | 134.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 559 | 134.68 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 640 | 135.16 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 671 | 135.35 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 789 | 136.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |