BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0138500 Os06g0138500|AK066485
(383 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27230.1 | chr3:10054224-10055456 FORWARD LENGTH=411 249 2e-66
AT5G40830.1 | chr5:16354611-16355855 REVERSE LENGTH=415 244 7e-65
AT3G05390.1 | chr3:1546585-1547976 REVERSE LENGTH=464 160 9e-40
AT1G29790.1 | chr1:10430025-10431161 FORWARD LENGTH=379 150 1e-36
AT4G01240.1 | chr4:517795-521972 REVERSE LENGTH=660 144 1e-34
>AT3G27230.1 | chr3:10054224-10055456 FORWARD LENGTH=411
Length = 410
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 202/365 (55%), Gaps = 71/365 (19%)
Query: 70 ISDHVAAIAREIDTSS-------SSHLPYRADGLPX-----XXXXXXXXXXXXXGRDART 117
+S H++ I REID+S L Y + + G+D+RT
Sbjct: 64 VSQHLSLILREIDSSQRKLAQMEKQMLGYESIDISRPNIVPELKLFLQRHQLPLGKDSRT 123
Query: 118 GLTHMPASVAHSCFRSPATLSLLAAFMSYDPHAACPRNATLQQHRLLSKACEPLPRRRCL 177
G+T M +SV HSC +S LL+ +MSY CP + +L Q +L+ +ACEPLPRRRCL
Sbjct: 124 GITEMVSSVGHSCGKST---DLLSQYMSYKVFDRCPDDWSLGQ-KLILRACEPLPRRRCL 179
Query: 178 ---------SGGP-------------------------------RAALPASNMGVDGRRW 197
S P + + ++GV+ R+
Sbjct: 180 AKTVQKQDLSKSPDSLWRSVSNKSVNWSGLGCKSFDCLKGKKLSKECVGCFDLGVEKDRF 239
Query: 198 VRPRHDYEFLLDDVLRLGATRIRIGLDVAGGAANFAARMRDRGVTVVTTVLDNAGKPMNE 257
V+ + +FL+DDVL LG+ +IRIG D++GG+ FAARM ++ VTV+T L+N G P +E
Sbjct: 240 VKVKGKNDFLIDDVLGLGSGKIRIGFDISGGSGTFAARMAEKNVTVITNTLNN-GAPFSE 298
Query: 258 FVAARGLFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAPSMGNSGTEEALEFFMFDVD 317
F+AARGLFPL LS HRFPF D VFDL+H + EG A E LEF MFD+D
Sbjct: 299 FIAARGLFPLFLSLDHRFPFLDNVFDLIHASSGLDVEGKA---------EKLEFLMFDLD 349
Query: 318 RVLRVGGLLWIDSYLCQSEERRQLVVNLIKRFGYKKLKWMVGEKAGTGSAKTALYLSALL 377
RVL+ GL W+D++ C ++E+++ + +I+RFGYKKLKW++GEK A +YLSA+L
Sbjct: 350 RVLKPRGLFWLDNFYCANDEKKKELTRMIERFGYKKLKWVIGEK-----ADAQVYLSAVL 404
Query: 378 QKPAR 382
QKP R
Sbjct: 405 QKPVR 409
>AT5G40830.1 | chr5:16354611-16355855 REVERSE LENGTH=415
Length = 414
Score = 244 bits (622), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 199/367 (54%), Gaps = 71/367 (19%)
Query: 70 ISDHVAAIAREIDTSSSS------------HLPYRADGLPXXXXXXXXXXXXXXGRDART 117
+S H++ I REID+S + L +P G+D+RT
Sbjct: 64 VSQHLSLILREIDSSHHTLTQMEKQIIGYESLDLSQQEVPQELKLFLQQHQLPLGKDSRT 123
Query: 118 GLTHMPASVAHSCFRSPATLSLLAAFMSYDPHAACPRNATLQQHRLLSKACEPLPRRRCL 177
G+T M ASV HSC +L LL+ +MSY+ CP + +L Q +L+ +ACEPLPRRRCL
Sbjct: 124 GITQMVASVGHSC---EMSLDLLSQYMSYNVFEKCPDDWSLAQ-KLILRACEPLPRRRCL 179
Query: 178 SG---GPRAAL-------PASNMGV--------------------------------DGR 195
+ P AL P N V +
Sbjct: 180 AKTVHKPGLALFPDSLWRPVGNSSVNWSGLGCKSFECLKGKKLSRDCVGCFDLATSHEKD 239
Query: 196 RWVRPRHDYEFLLDDVLRLGATRIRIGLDVAGGAANFAARMRDRGVTVVTTVLDNAGKPM 255
R+V+ +FL+DDVL LG +IRIG D++ G+ FAARM ++ V +++ L N P
Sbjct: 240 RFVKVNGKTDFLIDDVLDLGDGKIRIGFDISSGSGTFAARMAEKNVNIISNTL-NIDAPF 298
Query: 256 NEFVAARGLFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAPSMGNSGTEEALEFFMFD 315
+EF+AARG+FPL +S R PFYD VFDL+H +N LD + S E LEF MFD
Sbjct: 299 SEFIAARGIFPLFMSLDQRLPFYDNVFDLIH-ASNGLD------LAVSNKPEKLEFLMFD 351
Query: 316 VDRVLRVGGLLWIDSYLCQSEERRQLVVNLIKRFGYKKLKWMVGEKAGTGSAKTALYLSA 375
+DR+L+ GGL W+D++ C ++E+++++ LI+RFGYKKLKW+VGEK ++LSA
Sbjct: 352 LDRILKPGGLFWLDNFYCGNDEKKRVLTRLIERFGYKKLKWVVGEK-----TDAEVFLSA 406
Query: 376 LLQKPAR 382
+LQKPAR
Sbjct: 407 VLQKPAR 413
>AT3G05390.1 | chr3:1546585-1547976 REVERSE LENGTH=464
Length = 463
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 154/317 (48%), Gaps = 67/317 (21%)
Query: 112 GRDARTGLTHMPASVAHSCFRSPATLSL-LAAFMSYDPHAACPRNATLQQHRLLSKACEP 170
G+ G + ++ H+C A + + L +M YD A C + L Q +L+ C+P
Sbjct: 166 GKINMFGTERVYNTIGHAC----ALMKMELEKYMDYDVGAYCDDDWNLAQ-KLMLNGCDP 220
Query: 171 LPRRRCLSGGPR-------------------------------AALPASN---------- 189
LPRRRCL+ A L + N
Sbjct: 221 LPRRRCLTRASMTYQKPYPINESLWKLPDDRNVRWGNYQCRNFACLSSKNPKRGYTKCSG 280
Query: 190 ---MGVDGRRWVRPRHDY-EFLLDDVLRLGATRIRIGLDVAGGAANFAARMRDRGVTVVT 245
M + +WV+ +F+++DVLR+ + IRIGLD G FAARMR++ VT+VT
Sbjct: 281 CFEMEKEKDKWVKNSSLLVDFMIEDVLRVKPSEIRIGLDYGVGTGTFAARMREKNVTIVT 340
Query: 246 TVLDNAGKPMNEFVAARGLFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAPSMGNSGT 305
T L N G P NE +A RGL PL +S R PF+D D++H T L +G +
Sbjct: 341 TAL-NLGAPFNEMIALRGLIPLYISLNQRLPFFDNTMDMIH--TTGLMDGWIDLL----- 392
Query: 306 EEALEFFMFDVDRVLRVGGLLWIDSYLCQSEERRQLVVNLIKRFGYKKLKWMVGEKAGTG 365
++F ++D DRVLR GGLLWID + C+ ++ + ++ F YKK KW + K
Sbjct: 393 --LMDFVLYDWDRVLRPGGLLWIDRFFCKKKDLDDYMYMFLQ-FRYKKHKWAISPK---- 445
Query: 366 SAKTALYLSALLQKPAR 382
+K +YLSALL+KP R
Sbjct: 446 -SKDEVYLSALLEKPPR 461
>AT1G29790.1 | chr1:10430025-10431161 FORWARD LENGTH=379
Length = 378
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 48/288 (16%)
Query: 126 VAHSCFRSPATLSLLAAFMSYDPHAACPRNATLQQHRLLSKACEPLPRRRCLSGGPRA-- 183
+A +C P LL +M+Y P + CP + L + +L+ + C PLPRRRC S PR
Sbjct: 105 IASACHNYP---DLLHEYMNYTPFSLCPSDTDLVE-KLILRGCHPLPRRRCFSRTPRNPS 160
Query: 184 -ALPASN--------------------MGVD------GRRWVRPRHDYEFLLDDVLRLGA 216
+ P SN +G D ++ + + + + +L++
Sbjct: 161 DSKPESNVLWSYYSCKSFDCLITKFSDLGFDLSLEKSKSQFSAYKSELDLPISQLLQIAK 220
Query: 217 TR---IRIGLDVAGGAANFAARMRDRGVTVVTTVLDNAGKPMNEFVAARGLFPLLLSPAH 273
+ +R+G+DV GG +FAA M+ R VTV+TT + N P +E VA RGL PL +
Sbjct: 221 SANSVLRLGIDVGGGTGSFAAAMKARNVTVLTTTM-NFNAPYSEAVAMRGLVPLHVPLQQ 279
Query: 274 RFPFYDGVFDLVHVGTNALDEGGAPSMGNSGTEEALEFFMFDVDRVLRVGGLLWIDSYLC 333
R P +DGV DLV G ++ +EFF FD+DR+LR GG LW+D +
Sbjct: 280 RLPVFDGVVDLVRCGR---------AVNRWIPVTVMEFFFFDLDRILRGGGYLWLDRFFS 330
Query: 334 QSEERRQLVVNLIKRFGYKKLKWMVGEKAGTGSAKTALYLSALLQKPA 381
+ + + +I + GYKK+KW V KA + + ++L+ALLQKP
Sbjct: 331 KKVDLENVYAPMIGKLGYKKVKWAVANKADSKHGE--VFLTALLQKPV 376
>AT4G01240.1 | chr4:517795-521972 REVERSE LENGTH=660
Length = 659
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 144/324 (44%), Gaps = 70/324 (21%)
Query: 112 GRDARTGLTHMPASVAHSCFRSPATLSLLAAFMSYDPHAACPRNATLQQHRLLSKACEPL 171
G+ G S+ H+CF A L +M YD C + L Q +L+ C+PL
Sbjct: 350 GKQNFMGANGTFTSIGHACF---AMKKDLEEYMDYDVGEICNDDWRLAQ-KLMVHGCDPL 405
Query: 172 PRRRCLSGGPRA------------ALP------------------ASNMGV--------- 192
PRRRC S GP+ LP ASN
Sbjct: 406 PRRRCFSRGPQLYHKPFPINESLWKLPDNRNVRWGQYKCKNFACLASNTTARKGFFKCTD 465
Query: 193 -------DGRRWV-------RPRHDYEFLLDDVLRLGATRIRIGLDVAGGAANFAARMRD 238
+ RW+ +F + +VL + IRIGLD + G FAARMR+
Sbjct: 466 CFNLTHHESPRWLNRGEIDPETNQTADFSIAEVLEIKPGEIRIGLDFSIGTGTFAARMRE 525
Query: 239 RGVTVVTTVLDNAGKPMNEFVAARGLFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAP 298
+ VT+V+ + N G P NE +A RGL PL L+ R PF+D D++H T LD G
Sbjct: 526 QNVTIVSATI-NLGAPFNEMIALRGLVPLYLTVNQRLPFFDSTLDMIHT-TRFLD-GWID 582
Query: 299 SMGNSGTEEALEFFMFDVDRVLRVGGLLWIDSYLCQSEERRQLVVNLIKRFGYKKLKWMV 358
+ L+F +FD DRVLR GGLLWID + C E+ + K Y+K KW+V
Sbjct: 583 LI-------LLDFVLFDWDRVLRPGGLLWIDGFFCLKEDVSDY-MEAFKALRYRKHKWVV 634
Query: 359 GEKAGTGSAKTALYLSALLQKPAR 382
K + ++ SA+L+KP R
Sbjct: 635 VPKKDKDDKE--VFFSAVLEKPPR 656
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,170,408
Number of extensions: 275883
Number of successful extensions: 573
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 7
Length of query: 383
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 283
Effective length of database: 8,364,969
Effective search space: 2367286227
Effective search space used: 2367286227
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)