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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0113400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Methyltransferase type 11 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0194) R2 : 1.46e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00334 (0.0409) R2dN8 : 1.88e-05 R2N8 : 1.46e-05
σ : 0.366
deviance : 61.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.7 0.36 3.02 0.25 0.237 0.179 -1.47 -1.28 0.0478 11.1 0.8876 90 -- --
59.83 0.36 3.02 0.183 0.172 0.125 -0.0769 -- 0.0373 10.6 0.0574 126 -- --
59.78 0.36 3.02 0.173 0.24 0.185 -- -0.147 0.0368 10.9 0.05977 126 -- --
59.84 0.36 3.02 0.169 0.183 0.137 -- -- 0.0285 10.5 0.06 126 -- --
59.81 0.36 3.03 0.186 -- 0.176 -- -0.381 0.00554 -- 4.817e-06 919 -- --
60 0.363 3.03 0.161 0.114 -- -0.226 -- 0.0182 6.61 -- -- -- --
60.12 0.363 3.03 0.158 0.113 -- -- -- 0.0188 6.63 -- -- -- --
59.92 0.361 3.03 0.195 -- 0.176 -- -- 0.0264 -- 5.888e-05 929 -- --
60.62 0.363 3.02 -- 0.184 0.137 -- -- 0.0254 10.3 0.23 123 -- --
60.79 0.364 3.03 0.16 -- -- -- -- 0.0211 -- -- -- -- --
60.78 0.365 3.03 -- 0.115 -- -- -- 0.00129 6.55 -- -- -- --
60.78 0.363 3.03 -- -- 0.169 -- -- 0.0105 -- 0.0009577 919 -- --
61.47 0.366 3.03 -- -- -- -- -- 0.00334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.84 wind 1.0 30 < th dose independent rect. 10 1
2 54.84 temperature 10.0 1440 > th dose independent rect. 11 1
6 54.84 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 54.84 precipitation 0.1 1440 < th dose independent rect. 11 1
10 54.84 temperature 10.0 1440 > th dose independent rect. 12 23
13 54.84 wind 1.0 30 < th dose dependent rect. 10 1
14 54.84 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 54.93 atmosphere 1000.0 10 < th dose independent rect. 5 1
22 54.93 atmosphere 1000.0 10 < th dose dependent rect. 5 1
37 54.98 temperature 25.0 30 > th dose dependent rect. 10 1
38 54.99 humidity 70.0 30 < th dose independent rect. 10 1
39 55.02 atmosphere 1010.0 30 < th dose independent rect. 10 1
44 55.04 radiation 40.0 30 < th dose independent rect. 10 1
49 55.12 temperature 25.0 30 > th dose independent rect. 10 1
50 55.13 radiation 20.0 30 > th dose independent rect. 10 1
52 55.15 atmosphere 1005.0 30 > th dose independent rect. 10 1
54 55.17 humidity 80.0 30 < th dose dependent rect. 10 1
55 55.19 atmosphere 1000.0 30 > th dose dependent rect. 10 1
61 55.22 temperature 30.0 30 < th dose independent rect. 10 1
62 55.22 wind 5.0 30 < th dose dependent rect. 10 1
68 55.26 humidity 60.0 30 > th dose independent rect. 10 1
72 55.27 temperature 10.0 30 > th dose independent rect. 10 1
75 55.27 humidity 90.0 30 < th dose independent rect. 10 1
79 55.27 precipitation 0.1 30 < th dose independent rect. 10 1
80 55.27 temperature 10.0 30 > th dose independent rect. 11 23
81 55.27 precipitation 0.1 30 < th dose dependent rect. 10 1
82 55.29 wind 1.0 30 > th dose independent rect. 10 1
85 55.35 radiation 40.0 30 < th dose dependent rect. 10 1
87 55.41 radiation 1.0 30 > th dose dependent rect. 10 1
90 55.55 atmosphere 1015.0 30 < th dose dependent rect. 10 1
92 55.56 humidity 50.0 30 > th dose dependent rect. 10 1
94 55.70 wind 1.0 30 > th dose dependent rect. 10 1
105 56.15 wind 9.0 30 < th dose independent rect. 11 23
155 56.84 precipitation 0.1 30 < th dose independent rect. 11 23
156 56.84 precipitation 0.1 30 < th dose dependent rect. 11 23
158 56.88 radiation 1.0 30 > th dose independent rect. 11 23
163 56.96 atmosphere 1000.0 30 > th dose independent rect. 11 23
165 56.97 atmosphere 1000.0 270 < th dose dependent rect. 1 5
180 57.14 atmosphere 1005.0 30 > th dose dependent rect. 2 3
181 57.16 atmosphere 1000.0 270 < th dose independent rect. 1 5
213 57.51 temperature 25.0 270 > th dose independent rect. 2 1
215 57.51 temperature 25.0 270 > th dose dependent rect. 2 1
225 57.55 temperature 25.0 90 > th dose dependent rect. 1 4
228 57.58 wind 1.0 720 < th dose independent rect. 17 1
230 57.59 wind 1.0 720 < th dose dependent rect. 17 1
233 57.60 wind 1.0 720 < th dose dependent rect. 19 2
242 57.63 wind 1.0 720 < th dose independent rect. 17 3
244 57.63 atmosphere 1000.0 10 < th dose independent rect. 2 5
251 57.67 wind 1.0 1440 < th dose independent rect. 19 1
271 57.71 wind 1.0 14400 < th dose dependent rect. 16 1
302 57.80 wind 9.0 4320 > th dose independent rect. 3 1
335 57.80 wind 9.0 4320 > th dose dependent rect. 3 1
391 57.91 wind 1.0 14400 < th dose independent rect. 16 1
396 57.93 atmosphere 1005.0 30 > th dose independent rect. 2 3
397 57.93 atmosphere 1000.0 30 > th dose independent rect. 3 23
435 58.03 wind 1.0 14400 > th dose independent rect. 16 14
463 58.09 temperature 15.0 30 > th dose dependent rect. 2 3
465 58.10 wind 1.0 1440 > th dose independent rect. 19 1
473 58.11 temperature 25.0 270 < th dose independent rect. 20 13
474 58.11 humidity 50.0 30 > th dose independent rect. 11 23
485 58.13 wind 1.0 14400 < th dose independent rect. 16 14
489 58.14 atmosphere 1000.0 720 > th dose independent rect. 21 10
499 58.15 wind 1.0 14400 < th dose independent rect. 14 16
506 58.16 wind 1.0 270 < th dose independent rect. 11 12
535 58.22 wind 3.0 30 < th dose independent rect. 2 3
539 58.22 wind 3.0 720 < th dose dependent rect. 11 7
540 58.23 atmosphere 1005.0 90 > th dose independent rect. 2 1
547 58.23 wind 5.0 30 < th dose dependent rect. 2 3
560 58.25 wind 1.0 270 < th dose independent rect. 13 10
561 58.25 wind 1.0 270 < th dose independent rect. 9 14
571 58.26 atmosphere 1000.0 720 > th dose independent rect. 19 14
574 58.27 wind 1.0 14400 > th dose independent rect. 16 1
581 58.27 wind 3.0 720 < th dose dependent rect. 11 10
585 58.28 wind 3.0 720 < th dose dependent sin 21 NA
595 58.29 wind 3.0 720 < th dose dependent rect. 9 14
609 58.31 wind 1.0 14400 > th dose independent sin 13 NA
619 58.32 wind 9.0 4320 < th dose independent rect. 3 1
627 58.32 wind 1.0 90 < th dose dependent rect. 5 1
642 58.33 wind 3.0 720 < th dose dependent rect. 5 18
647 58.34 wind 1.0 14400 < th dose independent rect. 2 20
648 58.34 atmosphere 1000.0 10 > th dose independent rect. 5 21
655 58.35 wind 1.0 270 < th dose independent rect. 19 4
663 58.36 wind 3.0 90 < th dose independent rect. 2 1
681 58.37 wind 1.0 14400 < th dose independent rect. 23 6
682 58.37 wind 1.0 4320 < th dose independent rect. 15 7
686 58.37 wind 1.0 14400 > th dose independent rect. 2 20
695 58.38 temperature 10.0 30 > th dose independent rect. 2 1
697 58.38 temperature 10.0 1440 > th dose independent rect. 3 1
700 58.38 temperature 30.0 30 < th dose independent rect. 2 1
701 58.38 temperature 30.0 1440 < th dose independent rect. 3 1
705 58.38 humidity 50.0 30 > th dose independent rect. 2 1
708 58.38 humidity 50.0 1440 > th dose independent rect. 3 1
718 58.38 atmosphere 995.0 1440 > th dose independent rect. 3 1
719 58.38 atmosphere 1010.0 30 < th dose independent rect. 2 1
721 58.38 radiation 1.0 30 < th dose independent rect. 2 1
726 58.38 radiation 1.0 1440 < th dose independent rect. 3 1
746 58.38 precipitation 0.1 30 < th dose independent rect. 2 1
751 58.38 temperature 10.0 30 > th dose independent rect. 3 23
752 58.38 temperature 10.0 1440 > th dose independent rect. 4 23
755 58.38 wind 5.0 30 < th dose dependent rect. 2 1
759 58.38 humidity 50.0 30 > th dose dependent rect. 2 1
762 58.38 radiation 1.0 30 < th dose dependent rect. 2 1
767 58.38 radiation 1.0 1440 < th dose dependent rect. 3 1
780 58.38 precipitation 0.1 30 < th dose dependent rect. 2 1
783 58.39 wind 1.0 14400 < th dose independent sin 13 NA
802 58.40 wind 1.0 270 < th dose independent rect. 16 7
807 58.40 radiation 1.0 30 < th dose dependent rect. 19 23
810 58.41 wind 1.0 30 > th dose independent rect. 2 1
811 58.41 wind 3.0 720 > th dose independent rect. 17 2
812 58.41 wind 1.0 14400 > th dose independent rect. 23 6
833 58.42 atmosphere 1015.0 30 < th dose dependent rect. 2 1
842 58.43 precipitation 0.1 30 < th dose independent rect. 5 21
845 58.43 temperature 30.0 30 < th dose dependent rect. 2 1
849 58.43 precipitation 0.1 30 < th dose dependent rect. 5 21
865 58.45 humidity 90.0 270 < th dose independent rect. 1 1
878 58.45 radiation 1.0 90 < th dose independent rect. 7 22
880 58.45 atmosphere 1000.0 10 < th dose dependent rect. 14 5
883 58.45 radiation 1.0 90 < th dose dependent rect. 7 22
886 58.46 wind 9.0 1440 < th dose independent rect. 3 3
887 58.46 temperature 10.0 1440 > th dose independent rect. 3 3
890 58.46 temperature 30.0 1440 < th dose independent rect. 3 3
894 58.46 humidity 50.0 1440 > th dose independent rect. 3 3
903 58.46 atmosphere 995.0 1440 > th dose independent rect. 3 3
904 58.46 radiation 20.0 1440 < th dose independent rect. 3 3
913 58.46 precipitation 0.1 30 < th dose independent rect. 2 3
923 58.46 temperature 10.0 1440 > th dose independent rect. 6 21
926 58.46 wind 1.0 270 > th dose independent rect. 6 23
927 58.46 temperature 30.0 30 < th dose independent rect. 11 23
928 58.46 precipitation 0.1 30 < th dose independent rect. 3 23
934 58.46 atmosphere 1000.0 10 < th dose dependent rect. 15 3
936 58.46 precipitation 0.1 30 < th dose dependent rect. 2 3
943 58.46 wind 1.0 14400 < th dose dependent rect. 2 20
944 58.46 precipitation 0.1 30 < th dose dependent rect. 3 23
951 58.47 radiation 1.0 90 < th dose dependent rect. 1 23
957 58.48 temperature 10.0 30 > th dose independent rect. 2 3
959 58.48 temperature 30.0 30 < th dose independent rect. 2 3
960 58.48 humidity 50.0 30 > th dose independent rect. 2 3
963 58.48 atmosphere 995.0 30 > th dose independent rect. 2 3
964 58.48 atmosphere 1010.0 30 < th dose independent rect. 2 3
966 58.48 radiation 1.0 30 < th dose independent rect. 2 3
971 58.48 atmosphere 1000.0 10 < th dose independent rect. 14 4
976 58.48 radiation 1.0 30 < th dose independent rect. 2 12
978 58.48 wind 9.0 30 < th dose independent rect. 5 21
979 58.48 temperature 10.0 30 > th dose independent rect. 5 21
985 58.48 radiation 1.0 30 < th dose dependent rect. 2 3
993 58.48 wind 1.0 14400 < th dose dependent rect. 14 16
997 58.49 wind 1.0 90 < th dose independent rect. 14 1
1000 58.49 wind 1.0 14400 > th dose independent rect. 1 3