BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0113400 Os08g0113400|AK111245
(419 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05390.1 | chr3:1546585-1547976 REVERSE LENGTH=464 214 5e-56
AT4G01240.1 | chr4:517795-521972 REVERSE LENGTH=660 199 3e-51
AT3G27230.1 | chr3:10054224-10055456 FORWARD LENGTH=411 190 1e-48
AT1G29790.1 | chr1:10430025-10431161 FORWARD LENGTH=379 176 2e-44
AT5G40830.1 | chr5:16354611-16355855 REVERSE LENGTH=415 170 1e-42
>AT3G05390.1 | chr3:1546585-1547976 REVERSE LENGTH=464
Length = 463
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 172/312 (55%), Gaps = 22/312 (7%)
Query: 126 LSGELELAVAPHRNVTGKATVF------PALGHACARFQDDLEAYMRYTPGGECPSDEQL 179
L E+ + P N GK +F +GHACA + +LE YM Y G C D L
Sbjct: 150 LIEEIRQYITPKENRVGKINMFGTERVYNTIGHACALMKMELEKYMDYDVGAYCDDDWNL 209
Query: 180 ARRLMLNGCDXXXXXXXXXXXXAGYVQPSPLTKSLWAIPPDTTVVWDAYRCKNYSCLVRX 239
A++LMLNGCD Y +P P+ +SLW +P D V W Y+C+N++CL
Sbjct: 210 AQKLMLNGCDPLPRRRCLTRASMTYQKPYPINESLWKLPDDRNVRWGNYQCRNFACLSSK 269
Query: 240 XXXXEFDL------LGREKRRWMRDDGALA-YSIDSVLAARPNGTVRIGLDIGGVSGTFA 292
+ + +EK +W+++ L + I+ VL +P+ +RIGLD G +GTFA
Sbjct: 270 NPKRGYTKCSGCFEMEKEKDKWVKNSSLLVDFMIEDVLRVKPS-EIRIGLDYGVGTGTFA 328
Query: 293 ARMRERGVAVATTAMNSGGPSGSLIASRGLVPVHVGPAHRLPFFDGTLDIVHWTSPEH-- 350
ARMRE+ V + TTA+N G P +IA RGL+P+++ RLPFFD T+D++H T
Sbjct: 329 ARMREKNVTIVTTALNLGAPFNEMIALRGLIPLYISLNQRLPFFDNTMDMIHTTGLMDGW 388
Query: 351 VAGVMLEFALFDIYRVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRRLRWNTGKK-- 408
+ ++++F L+D RVLRPGGLLW+D F + L+ + M + +++ +W K
Sbjct: 389 IDLLLMDFVLYDWDRVLRPGGLLWIDRFFCKKKDLD-DYMYMFLQFRYKKHKWAISPKSK 447
Query: 409 ---LVSALLEKP 417
+SALLEKP
Sbjct: 448 DEVYLSALLEKP 459
>AT4G01240.1 | chr4:517795-521972 REVERSE LENGTH=660
Length = 659
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 33/334 (9%)
Query: 115 RRDGGTPWARELSGELE--LAVAPHR----NVTGKATVFPALGHACARFQDDLEAYMRYT 168
++ G P + E++ + + P+R N G F ++GHAC + DLE YM Y
Sbjct: 323 KQQKGDPGEHFMREEIKKYIKIKPNRLGKQNFMGANGTFTSIGHACFAMKKDLEEYMDYD 382
Query: 169 PGGECPSDEQLARRLMLNGCDXXXXXXXXXXXXAGYVQPSPLTKSLWAIPPDTTVVWDAY 228
G C D +LA++LM++GCD Y +P P+ +SLW +P + V W Y
Sbjct: 383 VGEICNDDWRLAQKLMVHGCDPLPRRRCFSRGPQLYHKPFPINESLWKLPDNRNVRWGQY 442
Query: 229 RCKNYSCLVRXXXXXE--------FDLLGREKRRWM-------RDDGALAYSIDSVLAAR 273
+CKN++CL + F+L E RW+ + +SI VL +
Sbjct: 443 KCKNFACLASNTTARKGFFKCTDCFNLTHHESPRWLNRGEIDPETNQTADFSIAEVLEIK 502
Query: 274 PNGTVRIGLDIGGVSGTFAARMRERGVAVATTAMNSGGPSGSLIASRGLVPVHVGPAHRL 333
P G +RIGLD +GTFAARMRE+ V + + +N G P +IA RGLVP+++ RL
Sbjct: 503 P-GEIRIGLDFSIGTGTFAARMREQNVTIVSATINLGAPFNEMIALRGLVPLYLTVNQRL 561
Query: 334 PFFDGTLDIVHWTSPEH--VAGVMLEFALFDIYRVLRPGGLLWLDHFVFPGEQLNATFAP 391
PFFD TLD++H T + ++L+F LFD RVLRPGGLLW+D F E + + +
Sbjct: 562 PFFDSTLDMIHTTRFLDGWIDLILLDFVLFDWDRVLRPGGLLWIDGFFCLKEDV-SDYME 620
Query: 392 MVDRVGFRRLRW--------NTGKKLVSALLEKP 417
+ +R+ +W + + SA+LEKP
Sbjct: 621 AFKALRYRKHKWVVVPKKDKDDKEVFFSAVLEKP 654
>AT3G27230.1 | chr3:10054224-10055456 FORWARD LENGTH=411
Length = 410
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 163/310 (52%), Gaps = 26/310 (8%)
Query: 129 ELELAVAPHR------NVTGKATVFPALGHACARFQDDLEAYMRYTPGGECPSDEQLARR 182
EL+L + H+ + TG + ++GH+C + D L YM Y CP D L ++
Sbjct: 105 ELKLFLQRHQLPLGKDSRTGITEMVSSVGHSCGKSTDLLSQYMSYKVFDRCPDDWSLGQK 164
Query: 183 LMLNGCDXXXXXXXXXXXXAGYVQPSPLTKS---LWAIPPDTTVVWDAYRCKNYSCLVRX 239
L+L C+ A VQ L+KS LW + +V W CK++ CL
Sbjct: 165 LILRACEPLPRRRCL----AKTVQKQDLSKSPDSLWRSVSNKSVNWSGLGCKSFDCLKGK 220
Query: 240 XXXXE----FDLLGREKRRWMRDDGALAYSIDSVLAARPNGTVRIGLDIGGVSGTFAARM 295
E FDL G EK R+++ G + ID VL +G +RIG DI G SGTFAARM
Sbjct: 221 KLSKECVGCFDL-GVEKDRFVKVKGKNDFLIDDVLGL-GSGKIRIGFDISGGSGTFAARM 278
Query: 296 RERGVAVATTAMNSGGPSGSLIASRGLVPVHVGPAHRLPFFDGTLDIVHWTSPEHVAGV- 354
E+ V V T +N+G P IA+RGL P+ + HR PF D D++H +S V G
Sbjct: 279 AEKNVTVITNTLNNGAPFSEFIAARGLFPLFLSLDHRFPFLDNVFDLIHASSGLDVEGKA 338
Query: 355 -MLEFALFDIYRVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRRLRWNTGKK----- 408
LEF +FD+ RVL+P GL WLD+F ++ M++R G+++L+W G+K
Sbjct: 339 EKLEFLMFDLDRVLKPRGLFWLDNFYCANDEKKKELTRMIERFGYKKLKWVIGEKADAQV 398
Query: 409 LVSALLEKPM 418
+SA+L+KP+
Sbjct: 399 YLSAVLQKPV 408
>AT1G29790.1 | chr1:10430025-10431161 FORWARD LENGTH=379
Length = 378
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 144/289 (49%), Gaps = 37/289 (12%)
Query: 150 LGHACARFQDDLEAYMRYTPGGECPSDEQLARRLMLNGCDXXXXXXXXXXXXAGYVQPSP 209
+ AC + D L YM YTP CPSD L +L+L GC P P
Sbjct: 105 IASACHNYPDLLHEYMNYTPFSLCPSDTDLVEKLILRGC-----------------HPLP 147
Query: 210 LTKSLWAIP-------PDTTVVWDAYRCKNYSCLVRXXXXXEFDL-LGREKRRWMRDDGA 261
+ P P++ V+W Y CK++ CL+ FDL L + K ++
Sbjct: 148 RRRCFSRTPRNPSDSKPESNVLWSYYSCKSFDCLITKFSDLGFDLSLEKSKSQFSAYKSE 207
Query: 262 LAYSIDSVL--AARPNGTVRIGLDIGGVSGTFAARMRERGVAVATTAMNSGGPSGSLIAS 319
L I +L A N +R+G+D+GG +G+FAA M+ R V V TT MN P +A
Sbjct: 208 LDLPISQLLQIAKSANSVLRLGIDVGGGTGSFAAAMKARNVTVLTTTMNFNAPYSEAVAM 267
Query: 320 RGLVPVHVGPAHRLPFFDGTLDIVHWTSPEH--VAGVMLEFALFDIYRVLRPGGLLWLDH 377
RGLVP+HV RLP FDG +D+V + + ++EF FD+ R+LR GG LWLD
Sbjct: 268 RGLVPLHVPLQQRLPVFDGVVDLVRCGRAVNRWIPVTVMEFFFFDLDRILRGGGYLWLDR 327
Query: 378 FVFPGEQLNATFAPMVDRVGFRRLRWNTGKK--------LVSALLEKPM 418
F L +APM+ ++G+++++W K ++ALL+KP+
Sbjct: 328 FFSKKVDLENVYAPMIGKLGYKKVKWAVANKADSKHGEVFLTALLQKPV 376
>AT5G40830.1 | chr5:16354611-16355855 REVERSE LENGTH=415
Length = 414
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 163/317 (51%), Gaps = 28/317 (8%)
Query: 124 RELSGELELAVAPHR------NVTGKATVFPALGHACARFQDDLEAYMRYTPGGECPSDE 177
+E+ EL+L + H+ + TG + ++GH+C D L YM Y +CP D
Sbjct: 100 QEVPQELKLFLQQHQLPLGKDSRTGITQMVASVGHSCEMSLDLLSQYMSYNVFEKCPDDW 159
Query: 178 QLARRLMLNGCDXXXXXXXXXXXXAGYVQPSPLT---KSLWAIPPDTTVVWDAYRCKNYS 234
LA++L+L C+ A V L SLW +++V W CK++
Sbjct: 160 SLAQKLILRACEPLPRRRCL----AKTVHKPGLALFPDSLWRPVGNSSVNWSGLGCKSFE 215
Query: 235 CLVRXXXXXE----FDL-LGREKRRWMRDDGALAYSIDSVLAARPNGTVRIGLDIGGVSG 289
CL + FDL EK R+++ +G + ID VL +G +RIG DI SG
Sbjct: 216 CLKGKKLSRDCVGCFDLATSHEKDRFVKVNGKTDFLIDDVLDL-GDGKIRIGFDISSGSG 274
Query: 290 TFAARMRERGVAVATTAMNSGGPSGSLIASRGLVPVHVGPAHRLPFFDGTLDIVHWTSPE 349
TFAARM E+ V + + +N P IA+RG+ P+ + RLPF+D D++H ++
Sbjct: 275 TFAARMAEKNVNIISNTLNIDAPFSEFIAARGIFPLFMSLDQRLPFYDNVFDLIHASNGL 334
Query: 350 HVAGV----MLEFALFDIYRVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRRLRWNT 405
+A LEF +FD+ R+L+PGGL WLD+F ++ +++R G+++L+W
Sbjct: 335 DLAVSNKPEKLEFLMFDLDRILKPGGLFWLDNFYCGNDEKKRVLTRLIERFGYKKLKWVV 394
Query: 406 GKK-----LVSALLEKP 417
G+K +SA+L+KP
Sbjct: 395 GEKTDAEVFLSAVLQKP 411
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,988,331
Number of extensions: 300968
Number of successful extensions: 501
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 5
Length of query: 419
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 318
Effective length of database: 8,337,553
Effective search space: 2651341854
Effective search space used: 2651341854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)