BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0113400 Os08g0113400|AK111245
(419 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0113400 Methyltransferase type 11 domain containing pr... 700 0.0
Os04g0444700 SAM (and some other nucleotide) binding motif ... 297 1e-80
Os06g0474300 Methyltransferase type 11 domain containing pr... 200 1e-51
Os10g0578600 Conserved hypothetical protein 139 6e-33
Os06g0138500 Conserved hypothetical protein 137 1e-32
>Os08g0113400 Methyltransferase type 11 domain containing protein
Length = 419
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/419 (83%), Positives = 351/419 (83%)
Query: 1 MDPYCDGKSKKSPAMGRRRRYFRCGXXXXXXXXFVVTNXXXXXXXXXXXXXXXRRYKPAT 60
MDPYCDGKSKKSPAMGRRRRYFRCG FVVTN RRYKPAT
Sbjct: 1 MDPYCDGKSKKSPAMGRRRRYFRCGTTMLTMLLFVVTNSASVLLSSGAGAFLLRRYKPAT 60
Query: 61 XXXXXXXXXXXXXXXXNATQSALADTHAQLADLHARLGTANSXXXXXXXXXXXXRRDGGT 120
NATQSALADTHAQLADLHARLGTANS RRDGGT
Sbjct: 61 ARLWAWDDSAALLDDLNATQSALADTHAQLADLHARLGTANSLLETLLAAMAAERRDGGT 120
Query: 121 PWARELSGELELAVAPHRNVTGKATVFPALGHACARFQDDLEAYMRYTPGGECPSDEQLA 180
PWARELSGELELAVAPHRNVTGKATVFPALGHACARFQDDLEAYMRYTPGGECPSDEQLA
Sbjct: 121 PWARELSGELELAVAPHRNVTGKATVFPALGHACARFQDDLEAYMRYTPGGECPSDEQLA 180
Query: 181 RRLMLNGCDXXXXXXXXXXXXAGYVQPSPLTKSLWAIPPDTTVVWDAYRCKNYSCLVRXX 240
RRLMLNGCD AGYVQPSPLTKSLWAIPPDTTVVWDAYRCKNYSCLVR
Sbjct: 181 RRLMLNGCDPLPRRRCRPRSPAGYVQPSPLTKSLWAIPPDTTVVWDAYRCKNYSCLVRGG 240
Query: 241 XXXEFDLLGREKRRWMRDDGALAYSIDSVLAARPNGTVRIGLDIGGVSGTFAARMRERGV 300
EFDLLGREKRRWMRDDGALAYSIDSVLAARPNGTVRIGLDIGGVSGTFAARMRERGV
Sbjct: 241 GGGEFDLLGREKRRWMRDDGALAYSIDSVLAARPNGTVRIGLDIGGVSGTFAARMRERGV 300
Query: 301 AVATTAMNSGGPSGSLIASRGLVPVHVGPAHRLPFFDGTLDIVHWTSPEHVAGVMLEFAL 360
AVATTAMNSGGPSGSLIASRGLVPVHVGPAHRLPFFDGTLDIVHWTSPEHVAGVMLEFAL
Sbjct: 301 AVATTAMNSGGPSGSLIASRGLVPVHVGPAHRLPFFDGTLDIVHWTSPEHVAGVMLEFAL 360
Query: 361 FDIYRVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRRLRWNTGKKLVSALLEKPMT 419
FDIYRVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRRLRWNTGKKLVSALLEKPMT
Sbjct: 361 FDIYRVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRRLRWNTGKKLVSALLEKPMT 419
>Os04g0444700 SAM (and some other nucleotide) binding motif domain containing
protein
Length = 448
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/329 (50%), Positives = 203/329 (61%), Gaps = 31/329 (9%)
Query: 122 WARELSGELELAVAPHR------NVTGKATVFPALGHACARFQDDLEAYMRYTPGGECPS 175
W E +GEL LA PHR G + P +G AC FQD+L YM Y GGECP
Sbjct: 120 WPEEPTGELRLATEPHRLPLGFSAKLGTDELHPGVGFACRNFQDELARYMAYDAGGECPD 179
Query: 176 D-EQLARRLMLNGCDXXXXXXXXXXXXAGYVQPSPLTKSLWAIPPDTTVVWDAYRCKNYS 234
D + L +L+L GC+ A YV+P+PL SLW+IPPDTTV W Y CKNY+
Sbjct: 180 DADALELQLILKGCEPLPRRRCRPRSPARYVEPAPLPGSLWSIPPDTTVNWSPYACKNYT 239
Query: 235 CLVRXXXXXE-----------FDLL--GREKRRWMRDDGALAYSIDSVLAARPNGTVRIG 281
CLV FDL G+E+RRWM D+G +SID VLA+R GTVR+G
Sbjct: 240 CLVGRARARGGGGGSYECKDCFDLAAGGKERRRWMSDNGGPGFSIDGVLASRAPGTVRVG 299
Query: 282 LDIGGVSGTFAARMRERGVAVATTAMNSGGPSGSLIASRGLVPVHVGPAHRLPFFDGTLD 341
LDIGG +GTFAARMRERGV V TT ++ G P + +ASRGLVP+ + A RLP DG +D
Sbjct: 300 LDIGGGAGTFAARMRERGVTVVTTTLDVGAPFSAFVASRGLVPLQLSLAQRLPLADGVMD 359
Query: 342 IVHWTS-PEHVAGVMLEFALFDIYRVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRR 400
IVH V G +LE ALFD+YRVLRPGG+ WLDHF G +LN T+AP++DRVGFRR
Sbjct: 360 IVHAMQLGGWVPGAVLELALFDVYRVLRPGGVFWLDHFACVGPRLNDTYAPILDRVGFRR 419
Query: 401 LRWNTGKKL----------VSALLEKPMT 419
LRW +KL +SALLEKP+T
Sbjct: 420 LRWKASRKLDLGAERNEWYLSALLEKPLT 448
>Os06g0474300 Methyltransferase type 11 domain containing protein
Length = 480
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 171/334 (51%), Gaps = 39/334 (11%)
Query: 117 DGGTPWAREL-----SGELELAVAPHRNVTGKATVFPA------LGHACARFQDDLEAYM 165
DGG P L + E V RN G+ + A +GHAC + +L+ YM
Sbjct: 152 DGGAPAVDPLVNFFAAEETRKYVTAKRNREGRPGAYGANRTYGSIGHACVVMRRELDEYM 211
Query: 166 RYTPGGECPSDEQLARRLMLNGCDXXXXXXXXXXXXAGYVQPSPLTKSLWAIPPDTTVVW 225
Y G CP D L +RLML GCD + +P P+ +SLWA+P D V W
Sbjct: 212 SYDVGALCPDDWDLGQRLMLGGCDPLPRRRCLARASKLFRRPLPINESLWALPDDGNVRW 271
Query: 226 DAYRCKNYSCLVRXXXXXEFDL------LGREKRRWMRDDGALA---YSIDSVLAARPNG 276
Y C+ Y CL +D + REK+RWM+ + ++ VLA +P G
Sbjct: 272 SRYHCRGYRCLSARNPRRGYDRCVGCFDMDREKQRWMQGSNGTTLADFRMEEVLAVKP-G 330
Query: 277 TVRIGLDIGGVSGTFAARMRERGVAVATTAMNSGGPSGSLIASRGLVPVHVGPAHRLPFF 336
+R+GLD+ +G+FAARMRERGV V TTA+N G P +A RGLV ++ G RLP F
Sbjct: 331 EIRVGLDVTVGTGSFAARMRERGVTVVTTAVNLGAPFAETVALRGLVALYAGLGQRLPLF 390
Query: 337 DGTLDIVH-------WTSPEHVAGVMLEFALFDIYRVLRPGGLLWLDHFVFPGEQLNATF 389
D ++D+VH W + ML+F LFD RVLRPGGLLW+D F + L+ +
Sbjct: 391 DNSMDMVHTGGVLDGWVDLQ-----MLDFVLFDWDRVLRPGGLLWVDKFACARKDLD-DY 444
Query: 390 APMVDRVGFRRLRWNTGKK-----LVSALLEKPM 418
M + +++ RW K +SALLEKP+
Sbjct: 445 MYMFLQFRYKKHRWVVSFKSRDEVYLSALLEKPL 478
>Os10g0578600 Conserved hypothetical protein
Length = 395
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 130/268 (48%), Gaps = 12/268 (4%)
Query: 150 LGHACARFQDDLEAYMRYTPGGECPSDE-QLARRLMLNGCDXXXXXXXXXXXXAGYVQP- 207
L AC+ D L +M YTP CP D LA L+L GC
Sbjct: 106 LASACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFSSSSISSSHNL 165
Query: 208 SPLTKSLWAIPPDTTVVWD-AYRCKNYSCLVRXXXXXEFDLLGREKRRWMRDDGALAYSI 266
+ L ++ PD+ V W +C ++SCL FDL E R++R +G L ++
Sbjct: 166 NNLPTDPFSPLPDSAVRWPPGAKCTSFSCL---PPSLGFDLARTEAARFLRAEGPLDLTV 222
Query: 267 DSVL---AARPNGTVRIGLDIGGVSGTFAARM-RERGVAVATTAMNSGGPSGSLIASRGL 322
+L + G +R+GLD+GG +GT AAR+ R V TT MN G P A+RG+
Sbjct: 223 PQLLRLASLSRAGPIRLGLDVGGGTGTLAARLKRAANATVLTTTMNLGAPYSEAAAARGV 282
Query: 323 VPVHVGPAHRLPFFDGTLDIVHWTSPEH--VAGVMLEFALFDIYRVLRPGGLLWLDHFVF 380
VP+H R P D T+D+V + + LEF +D RVLRP GLLW+DHF
Sbjct: 283 VPLHAPLQQRFPVGDATMDLVRAGHAVNRWIPEAALEFLWYDADRVLRPRGLLWVDHFWC 342
Query: 381 PGEQLNATFAPMVDRVGFRRLRWNTGKK 408
L A + PM+ R+G++ L+W K
Sbjct: 343 RRPDLAAVYQPMLRRLGYKTLKWAVADK 370
>Os06g0138500 Conserved hypothetical protein
Length = 383
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 150/325 (46%), Gaps = 73/325 (22%)
Query: 126 LSGELELAVAPH-----RNVTGKATVFPA-LGHACARFQDDLE---AYMRYTPGGECPSD 176
L EL L ++PH R+ T PA + H+C R L A+M Y P CP +
Sbjct: 96 LPPELLLFLSPHALPLGRDARTGLTHMPASVAHSCFRSPATLSLLAAFMSYDPHAACPRN 155
Query: 177 EQLAR-RLMLNGCDXXXXXXXXXXXXAGYVQPSPLTKSLWAIPPDTTVVWDAYRCKNYSC 235
L + RL+ C +P P + L P A N
Sbjct: 156 ATLQQHRLLSKAC-----------------EPLPRRRCLSGGP------RAALPASN--- 189
Query: 236 LVRXXXXXEFDLLGREKRRWMRDDGALAYSIDSVLAARPNGT-VRIGLDIGGVSGTFAAR 294
+G + RRW+R + +D VL R T +RIGLD+ G + FAAR
Sbjct: 190 ------------MGVDGRRWVRPRHDYEFLLDDVL--RLGATRIRIGLDVAGGAANFAAR 235
Query: 295 MRERGVAVATTAM-NSGGPSGSLIASRGLVPVHVGPAHRLPFFDGTLDIVHWTSPEHVAG 353
MR+RGV V TT + N+G P +A+RGL P+ + PAHR PF+DG D+VH + G
Sbjct: 236 MRDRGVTVVTTVLDNAGKPMNEFVAARGLFPLLLSPAHRFPFYDGVFDLVHVGTNALDEG 295
Query: 354 -----------VMLEFALFDIYRVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRRLR 402
LEF +FD+ RVLR GGLLW+D ++ E+ ++ R G+++L+
Sbjct: 296 GAPSMGNSGTEEALEFFMFDVDRVLRVGGLLWIDSYLCQSEERRQLVVNLIKRFGYKKLK 355
Query: 403 WNTGKK----------LVSALLEKP 417
W G+K +SALL+KP
Sbjct: 356 WMVGEKAGTGSAKTALYLSALLQKP 380
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,574,388
Number of extensions: 548515
Number of successful extensions: 1282
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 5
Length of query: 419
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 316
Effective length of database: 11,657,759
Effective search space: 3683851844
Effective search space used: 3683851844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)