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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0578600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.25 (0.0377) R2 : 0.692
β1 : -2.02 (0.139) R2dD : 0.16 R2D : 0.157
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.46 (0.134) R2dE : 0.473 R2E : 0.5
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.687 (0.0805) R2dN8 : 0.0653 R2N8 : 0.0142
σ : 0.705
deviance : 229.34
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 1.172
memory length : 171
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7
open length of G : 20.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
217.7 0.693 6.2 -1.88 0.727 -2.7 1.4 3.1 -0.578 4.12 8.215 109 7.77 20.1
226.39 0.701 6.21 -2.11 0.909 -2.48 0.624 -- -0.587 4.25 7.933 98 7.72 20.4
220.57 0.692 6.24 -2.09 0.775 -2.59 -- 1.98 -0.691 3.84 5.449 114 7.77 20
218.33 0.688 6.28 -2.19 0.633 -2.81 -- -- -0.765 3.46 -0.8243 157 7.37 20.3
227.5 0.702 6.22 -1.87 -- -3.37 -- 1.81 -0.574 -- 6.778 151 7.29 19.9
330.87 0.853 6.23 -2.48 2.16 -- 0.399 -- -0.759 4.93 -- -- -- --
331.28 0.852 6.23 -2.48 2.16 -- -- -- -0.761 4.94 -- -- -- --
229.34 0.705 6.25 -2.02 -- -3.46 -- -- -0.687 -- 1.172 171 7 20.4
335.08 0.853 6.21 -- 0.504 -3.25 -- -- -0.454 2.77 -0.4947 199 6.33 21.4
577.46 1.12 6.26 -2.4 -- -- -- -- -0.705 -- -- -- -- --
493.16 1.04 6.17 -- 2.12 -- -- -- -0.485 4.98 -- -- -- --
335.06 0.853 6.21 -- -- -3.76 -- -- -0.389 -- 8.074 155 7.08 20.5
729.29 1.26 6.2 -- -- -- -- -- -0.439 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.77 temperature 10.0 90 > th dose dependent rect. 8 20
2 224.87 radiation 1.0 270 < th dose independent rect. 3 11
7 227.41 temperature 10.0 10 > th dose dependent rect. 8 21
14 229.12 radiation 1.0 270 < th dose dependent rect. 3 11
42 234.95 temperature 15.0 90 > th dose independent rect. 7 22
54 237.45 temperature 15.0 90 > th dose independent rect. 8 20
57 238.13 humidity 80.0 30 > th dose independent rect. 5 9
61 239.24 radiation 1.0 270 > th dose independent sin 1 NA
65 239.52 radiation 1.0 270 < th dose independent sin 1 NA
68 239.99 humidity 80.0 90 > th dose dependent rect. 5 10
96 243.08 radiation 1.0 270 < th dose dependent sin 1 NA
98 243.20 humidity 80.0 30 > th dose independent rect. 5 7
107 244.37 humidity 80.0 90 > th dose independent rect. 5 3
124 245.41 humidity 80.0 30 > th dose independent rect. 5 15
132 246.21 humidity 70.0 90 > th dose dependent rect. 5 3
138 246.43 radiation 30.0 90 < th dose dependent rect. 5 3
139 246.52 atmosphere 995.0 90 > th dose dependent rect. 4 4
149 246.90 wind 9.0 90 < th dose independent rect. 7 22
162 247.57 radiation 1.0 270 < th dose dependent rect. 4 2
170 247.99 wind 7.0 90 < th dose independent rect. 5 2
172 247.99 temperature 10.0 90 > th dose independent rect. 5 2
174 247.99 temperature 30.0 90 < th dose independent rect. 5 2
175 247.99 humidity 50.0 90 > th dose independent rect. 5 2
177 247.99 atmosphere 995.0 90 > th dose independent rect. 5 2
178 247.99 atmosphere 1015.0 90 < th dose independent rect. 5 2
179 247.99 radiation 40.0 90 < th dose independent rect. 5 2
182 248.02 radiation 1.0 270 > th dose independent rect. 6 11
186 248.07 precipitation 0.1 90 < th dose independent rect. 5 2
187 248.07 precipitation 0.1 90 < th dose dependent rect. 5 2
208 248.87 wind 1.0 270 > th dose independent rect. 3 3
220 249.36 atmosphere 995.0 90 > th dose dependent rect. 5 2
233 249.85 wind 1.0 90 > th dose independent rect. 5 2
236 249.95 wind 9.0 270 < th dose independent rect. 3 3
237 249.95 temperature 10.0 270 > th dose independent rect. 3 3
239 249.95 temperature 30.0 270 < th dose independent rect. 3 3
240 249.95 humidity 50.0 270 > th dose independent rect. 3 3
243 249.95 atmosphere 995.0 270 > th dose independent rect. 3 3
244 249.95 atmosphere 1015.0 270 < th dose independent rect. 3 3
245 249.95 radiation 20.0 270 < th dose independent rect. 3 3
257 250.43 wind 9.0 90 < th dose independent rect. 8 20
279 251.02 precipitation 0.1 270 < th dose independent rect. 3 3
280 251.02 precipitation 0.1 270 < th dose dependent rect. 3 3
286 251.15 humidity 50.0 270 > th dose dependent rect. 3 3
301 251.67 wind 9.0 90 < th dose dependent rect. 5 2
336 252.80 wind 7.0 10 < th dose independent rect. 8 21
372 253.93 humidity 90.0 90 < th dose independent rect. 7 11
373 253.94 atmosphere 995.0 90 > th dose independent rect. 7 22
374 254.05 precipitation 0.1 270 < th dose independent rect. 6 21
375 254.05 precipitation 0.1 270 < th dose dependent rect. 6 21
379 254.34 temperature 10.0 90 > th dose dependent rect. 5 2
382 254.40 temperature 15.0 90 > th dose independent rect. 8 10
392 254.78 atmosphere 995.0 90 > th dose independent rect. 8 20
393 254.79 humidity 80.0 30 > th dose independent sin 2 NA
415 255.16 wind 9.0 90 < th dose dependent rect. 8 20
417 255.33 temperature 30.0 90 < th dose dependent rect. 5 2
457 256.39 atmosphere 1015.0 90 < th dose independent rect. 8 20
494 257.11 temperature 10.0 270 > th dose dependent rect. 3 3
498 257.16 precipitation 0.1 90 < th dose independent rect. 8 20
500 257.16 precipitation 0.1 90 < th dose dependent rect. 8 20
509 257.45 wind 7.0 10 < th dose independent rect. 5 3
511 257.45 temperature 10.0 10 > th dose independent rect. 5 3
513 257.45 temperature 30.0 10 < th dose independent rect. 5 3
514 257.45 humidity 50.0 10 > th dose independent rect. 5 3
516 257.45 atmosphere 995.0 10 > th dose independent rect. 5 3
517 257.45 atmosphere 1015.0 10 < th dose independent rect. 5 3
532 257.55 radiation 20.0 90 < th dose dependent rect. 5 10
551 257.93 wind 1.0 270 > th dose independent rect. 2 5
566 258.07 radiation 1.0 270 > th dose independent rect. 17 23
609 258.63 radiation 40.0 10 < th dose dependent rect. 5 3
635 259.12 atmosphere 1015.0 90 < th dose independent rect. 7 22
691 259.47 atmosphere 995.0 10 > th dose independent rect. 8 21
693 259.57 wind 9.0 90 < th dose dependent rect. 7 22
696 259.59 humidity 80.0 30 < th dose independent sin 2 NA
723 259.81 precipitation 0.1 10 < th dose independent rect. 8 21
724 259.81 precipitation 0.1 10 < th dose dependent rect. 8 21
880 261.40 atmosphere 1015.0 10 < th dose independent rect. 8 21
919 261.86 wind 9.0 1440 < th dose independent rect. 6 3
920 261.86 temperature 10.0 1440 > th dose independent rect. 6 3
923 261.86 humidity 50.0 1440 > th dose independent rect. 6 3
925 261.86 atmosphere 995.0 1440 > th dose independent rect. 6 3
926 261.86 atmosphere 1015.0 1440 < th dose independent rect. 6 3
927 261.86 temperature 10.0 1440 > th dose independent rect. 9 21
952 262.36 wind 7.0 90 < th dose independent rect. 8 10