BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0578600 Os10g0578600|AK119822
(395 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29790.1 | chr1:10430025-10431161 FORWARD LENGTH=379 308 3e-84
AT3G27230.1 | chr3:10054224-10055456 FORWARD LENGTH=411 205 3e-53
AT5G40830.1 | chr5:16354611-16355855 REVERSE LENGTH=415 200 1e-51
AT3G05390.1 | chr3:1546585-1547976 REVERSE LENGTH=464 166 2e-41
AT4G01240.1 | chr4:517795-521972 REVERSE LENGTH=660 156 2e-38
>AT1G29790.1 | chr1:10430025-10431161 FORWARD LENGTH=379
Length = 378
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 179/392 (45%), Positives = 229/392 (58%), Gaps = 40/392 (10%)
Query: 21 SLNIAFLLSMVATNLLSLYHLSTRASTXXXXXXXXXXXXXXXDEQLLRQLTAIRATVSQL 80
SLN+ L++MVATN+LSLYHLS+ + + LLRQL IRA ++ L
Sbjct: 7 SLNLLLLVAMVATNILSLYHLSSTTNFFQSTVKSSQSSVPTVPDHLLRQLHTIRAAINHL 66
Query: 81 NHLR----SSTXXXXXXX---------XELLLYSRLAPLASACSAHPDLLHRFMSYTPFS 127
+ +ST ELL+YS+L+P+ASAC +PDLLH +M+YTPFS
Sbjct: 67 TTHQPDKSTSTSTSRAAVSSSSSSTAPKELLIYSKLSPIASACHNYPDLLHEYMNYTPFS 126
Query: 128 PCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXXHNLNNLPTDPFSPLPDSAVRWPPGA 187
CP D L E L+LRGCHPLPRRRCF + P +P P+S V W +
Sbjct: 127 LCPSDT-DLVEKLILRGCHPLPRRRCF-----------SRTPRNPSDSKPESNVLWSYYS 174
Query: 188 KCTSFSCLPPS---LGFDLARTEA-ARFLRAEGPLDLTVPQLLRLASLSRAGPIRXXXXX 243
C SF CL LGFDL+ ++ ++F + LDL + QLL++A S +R
Sbjct: 175 -CKSFDCLITKFSDLGFDLSLEKSKSQFSAYKSELDLPISQLLQIAK-SANSVLRLGIDV 232
Query: 244 XXXXXXXAARLKRAANATVLTTTMNLGAPYSEAAAARGVVPLHAPLQQRFPVGDATMDLV 303
AA +K A N TVLTTTMN APYSEA A RG+VPLH PLQQR PV D +DLV
Sbjct: 233 GGGTGSFAAAMK-ARNVTVLTTTMNFNAPYSEAVAMRGLVPLHVPLQQRLPVFDGVVDLV 291
Query: 304 RAGHAVNRWIPEAALEFLWYDADRVLRPRGLLWVDHFWCRRPDLAAVYQPMLRRLGYKTL 363
R G AVNRWIP +EF ++D DR+LR G LW+D F+ ++ DL VY PM+ +LGYK +
Sbjct: 292 RCGRAVNRWIPVTVMEFFFFDLDRILRGGGYLWLDRFFSKKVDLENVYAPMIGKLGYKKV 351
Query: 364 KWAVADKXXXXXXXXXGAKHDHVYLTALLQKP 395
KWAVA+K +KH V+LTALLQKP
Sbjct: 352 KWAVANK--------ADSKHGEVFLTALLQKP 375
>AT3G27230.1 | chr3:10054224-10055456 FORWARD LENGTH=411
Length = 410
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 196/420 (46%), Gaps = 52/420 (12%)
Query: 6 DGVPAMRKTTVSSSSSLNIAFLLSMVATNLLSLYHLST--RASTXXXXXXXXXXXXXXXD 63
DG R+T++ SS+ +N+ L S+V TNL +LY S+ +A++
Sbjct: 10 DGTARFRRTSICSSA-VNLLMLFSVVTTNLFALYAFSSHSQANSPLLHSSNNISLVSQHL 68
Query: 64 EQLLRQLTAIRATVSQLNH----LRSSTXXXXXXXXELLLY-----------------SR 102
+LR++ + + ++Q+ S EL L+
Sbjct: 69 SLILREIDSSQRKLAQMEKQMLGYESIDISRPNIVPELKLFLQRHQLPLGKDSRTGITEM 128
Query: 103 LAPLASACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXX 162
++ + +C DLL ++MSY F CPDD SL + L+LR C PLPRRRC
Sbjct: 129 VSSVGHSCGKSTDLLSQYMSYKVFDRCPDD-WSLGQKLILRACEPLPRRRCLAKTVQK-- 185
Query: 163 HNLNNLPTDPFSPLPDSAVRWPPGAKCTSFSCLPPS------LG-FDLARTEAARFLRAE 215
+L+ P + + + +V W G C SF CL +G FDL E RF++ +
Sbjct: 186 QDLSKSPDSLWRSVSNKSVNWS-GLGCKSFDCLKGKKLSKECVGCFDLG-VEKDRFVKVK 243
Query: 216 GPLDLTVPQLLRLASLSRAGPIRXXXXXXXXXXXXAARLKRAANATVLTTTMNLGAPYSE 275
G D + +L L S G IR AAR+ N TV+T T+N GAP+SE
Sbjct: 244 GKNDFLIDDVLGLGS----GKIRIGFDISGGSGTFAARMAEK-NVTVITNTLNNGAPFSE 298
Query: 276 AAAARGVVPLHAPLQQRFPVGDATMDLVRAGHAVNRWIPEAALEFLWYDADRVLRPRGLL 335
AARG+ PL L RFP D DL+ A ++ LEFL +D DRVL+PRGL
Sbjct: 299 FIAARGLFPLFLSLDHRFPFLDNVFDLIHASSGLDVEGKAEKLEFLMFDLDRVLKPRGLF 358
Query: 336 WVDHFWCRRPDLAAVYQPMLRRLGYKTLKWAVADKXXXXXXXXXGAKHDHVYLTALLQKP 395
W+D+F+C + M+ R GYK LKW + +K VYL+A+LQKP
Sbjct: 359 WLDNFYCANDEKKKELTRMIERFGYKKLKWVIGEKADA-----------QVYLSAVLQKP 407
>AT5G40830.1 | chr5:16354611-16355855 REVERSE LENGTH=415
Length = 414
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 199/424 (46%), Gaps = 56/424 (13%)
Query: 6 DGVPAMRKTTVSSSSSLNIAFLLSMVATNLLSLYHLSTRASTXXXXXXXXXXXXXXXDEQ 65
DG +++T+ SS+ +N+ L S+V TNL +LY S+R+ +
Sbjct: 10 DGTARFKRSTLFSSA-INLLMLFSIVTTNLFALYAFSSRSQSHTPHPLHSNNVSLVSQHL 68
Query: 66 --LLRQLTAIRATVSQLNH----LRSSTXXXXXXXXELLLY-----------------SR 102
+LR++ + T++Q+ S EL L+
Sbjct: 69 SLILREIDSSHHTLTQMEKQIIGYESLDLSQQEVPQELKLFLQQHQLPLGKDSRTGITQM 128
Query: 103 LAPLASACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXX 162
+A + +C DLL ++MSY F CPDD SLA+ L+LR C PLPRRRC
Sbjct: 129 VASVGHSCEMSLDLLSQYMSYNVFEKCPDD-WSLAQKLILRACEPLPRRRCLAKTVHKP- 186
Query: 163 HNLNNLPTDPFSPLPDSAVRWPPGAKCTSFSCLPPS------LG-FDLART-EAARFLRA 214
L P + P+ +S+V W G C SF CL +G FDLA + E RF++
Sbjct: 187 -GLALFPDSLWRPVGNSSVNWS-GLGCKSFECLKGKKLSRDCVGCFDLATSHEKDRFVKV 244
Query: 215 EGPLDLTVPQLLRLASLSRAGPIRXXXXXXXXXXXXAARLKRAANATVLTTTMNLGAPYS 274
G D + +L L G IR AAR+ N +++ T+N+ AP+S
Sbjct: 245 NGKTDFLIDDVLDLGD----GKIRIGFDISSGSGTFAARMAEK-NVNIISNTLNIDAPFS 299
Query: 275 EAAAARGVVPLHAPLQQRFPVGDATMDLVRAGHAVNRWI---PEAALEFLWYDADRVLRP 331
E AARG+ PL L QR P D DL+ A + ++ + PE LEFL +D DR+L+P
Sbjct: 300 EFIAARGIFPLFMSLDQRLPFYDNVFDLIHASNGLDLAVSNKPEK-LEFLMFDLDRILKP 358
Query: 332 RGLLWVDHFWCRRPDLAAVYQPMLRRLGYKTLKWAVADKXXXXXXXXXGAKHDHVYLTAL 391
GL W+D+F+C + V ++ R GYK LKW V +K V+L+A+
Sbjct: 359 GGLFWLDNFYCGNDEKKRVLTRLIERFGYKKLKWVVGEKTDA-----------EVFLSAV 407
Query: 392 LQKP 395
LQKP
Sbjct: 408 LQKP 411
>AT3G05390.1 | chr3:1546585-1547976 REVERSE LENGTH=464
Length = 463
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 36/303 (11%)
Query: 106 LASACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXX--H 163
+ AC+ L ++M Y + C DD +LA+ L+L GC PLPRRRC +
Sbjct: 180 IGHACALMKMELEKYMDYDVGAYCDDD-WNLAQKLMLNGCDPLPRRRCLTRASMTYQKPY 238
Query: 164 NLNNLPTDPFSPLPDS-AVRWPPGAKCTSFSCLP---PSLG-------FDLARTEAARFL 212
+N + LPD VRW +C +F+CL P G F++ + +
Sbjct: 239 PIN----ESLWKLPDDRNVRWG-NYQCRNFACLSSKNPKRGYTKCSGCFEMEKEKDKWVK 293
Query: 213 RAEGPLDLTVPQLLRLASLSRAGPIRXXXXXXXXXXXXAARLKRAANATVLTTTMNLGAP 272
+ +D + +LR+ + IR AAR+ R N T++TT +NLGAP
Sbjct: 294 NSSLLVDFMIEDVLRV----KPSEIRIGLDYGVGTGTFAARM-REKNVTIVTTALNLGAP 348
Query: 273 YSEAAAARGVVPLHAPLQQRFPVGDATMDLVRAGHAVNRWIPEAALEFLWYDADRVLRPR 332
++E A RG++PL+ L QR P D TMD++ ++ WI ++F+ YD DRVLRP
Sbjct: 349 FNEMIALRGLIPLYISLNQRLPFFDNTMDMIHTTGLMDGWIDLLLMDFVLYDWDRVLRPG 408
Query: 333 GLLWVDHFWCRRPDLAAVYQPMLRRLGYKTLKWAVADKXXXXXXXXXGAKHDHVYLTALL 392
GLLW+D F+C++ DL Y M + YK KWA++ K D VYL+ALL
Sbjct: 409 GLLWIDRFFCKKKDLDD-YMYMFLQFRYKKHKWAISPKS-----------KDEVYLSALL 456
Query: 393 QKP 395
+KP
Sbjct: 457 EKP 459
>AT4G01240.1 | chr4:517795-521972 REVERSE LENGTH=660
Length = 659
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 153/315 (48%), Gaps = 43/315 (13%)
Query: 103 LAPLASACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFXXXXXXXX 162
+ AC A L +M Y C DD LA+ L++ GC PLPRRRCF
Sbjct: 361 FTSIGHACFAMKKDLEEYMDYDVGEICNDD-WRLAQKLMVHGCDPLPRRRCFSRGP---- 415
Query: 163 HNLNNLP---TDPFSPLPDS-AVRWPPGAKCTSFSCLPPSLG-----------FDLARTE 207
L + P + LPD+ VRW KC +F+CL + F+L E
Sbjct: 416 -QLYHKPFPINESLWKLPDNRNVRWGQ-YKCKNFACLASNTTARKGFFKCTDCFNLTHHE 473
Query: 208 AARFL-RAE------GPLDLTVPQLLRLASLSRAGPIRXXXXXXXXXXXXAARLKRAANA 260
+ R+L R E D ++ ++L + + G IR AAR+ R N
Sbjct: 474 SPRWLNRGEIDPETNQTADFSIAEVLEI----KPGEIRIGLDFSIGTGTFAARM-REQNV 528
Query: 261 TVLTTTMNLGAPYSEAAAARGVVPLHAPLQQRFPVGDATMDLVRAGHAVNRWIPEAALEF 320
T+++ T+NLGAP++E A RG+VPL+ + QR P D+T+D++ ++ WI L+F
Sbjct: 529 TIVSATINLGAPFNEMIALRGLVPLYLTVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDF 588
Query: 321 LWYDADRVLRPRGLLWVDHFWCRRPDLAAVYQPMLRRLGYKTLKWAVADKXXXXXXXXXG 380
+ +D DRVLRP GLLW+D F+C + D++ Y + L Y+ KW V K
Sbjct: 589 VLFDWDRVLRPGGLLWIDGFFCLKEDVSD-YMEAFKALRYRKHKWVVVPK--------KD 639
Query: 381 AKHDHVYLTALLQKP 395
V+ +A+L+KP
Sbjct: 640 KDDKEVFFSAVLEKP 654
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,876,172
Number of extensions: 252162
Number of successful extensions: 468
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 5
Length of query: 395
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,337,553
Effective search space: 2451240582
Effective search space used: 2451240582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)