BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0577800 Os10g0577800|AK072769
(591 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0577800 Poly(ADP-ribose) polymerase, catalytic region ... 1174 0.0
Os03g0854800 PARP, catalytic domain containing protein 333 2e-91
Os04g0672200 Poly(ADP-ribose) polymerase, catalytic region ... 223 3e-58
Os06g0248400 Poly(ADP-ribose) polymerase, catalytic region ... 171 1e-42
Os03g0230300 Poly(ADP-ribose) polymerase, catalytic region ... 140 2e-33
>Os10g0577800 Poly(ADP-ribose) polymerase, catalytic region domain containing
protein
Length = 591
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/591 (94%), Positives = 560/591 (94%)
Query: 1 MAAMNEKVLDKCGRNISSLKRKRDNPAARCADAGNTSKLHKHPADNSVVRFYVDEGHKAK 60
MAAMNEKVLDKCGRNISSLKRKRDNPAARCADAGNTSKLHKHPADNSVVRFYVDEGHKAK
Sbjct: 1 MAAMNEKVLDKCGRNISSLKRKRDNPAARCADAGNTSKLHKHPADNSVVRFYVDEGHKAK 60
Query: 61 IKCHFKMQIIQSYQNFMTSALPKRILLRQGGEWKDFPKQIVKLAHSDFRTKKTITEGEHQ 120
IKCHFKMQIIQSYQNFMTSALPKRILLRQGGEWKDFPKQIVKLAHSDFRTKKTITEGEHQ
Sbjct: 61 IKCHFKMQIIQSYQNFMTSALPKRILLRQGGEWKDFPKQIVKLAHSDFRTKKTITEGEHQ 120
Query: 121 THLFLLDFVHMTFIDSKTGLQRPIAWIDENGKQYFPEFFIEDKTLYRKKELGNGNNVYII 180
THLFLLDFVHMTFIDSKTGLQRPIAWIDENGKQYFPEFFIEDKTLYRKKELGNGNNVYII
Sbjct: 121 THLFLLDFVHMTFIDSKTGLQRPIAWIDENGKQYFPEFFIEDKTLYRKKELGNGNNVYII 180
Query: 181 VEPNGTQEMNDHFGTXXXXXXXXXXXXXTDDVSSPKRAKAERSVAGNKTGGVKETIGENE 240
VEPNGTQEMNDHFGT TDDVSSPKRAKAERSVAGNKTGGVKETIGENE
Sbjct: 181 VEPNGTQEMNDHFGTSESSAESSNFESSTDDVSSPKRAKAERSVAGNKTGGVKETIGENE 240
Query: 241 PHALLPIPCRSLPQDKLGDHSRVQLAISAVQKLLLQGLGTVLGSKDIVGIYRTPAVDNHK 300
PHALLPIPCRSLPQDKLGDHSRVQLAISAVQKLLLQGLGTVLGSKDIVGIYRTPAVDNHK
Sbjct: 241 PHALLPIPCRSLPQDKLGDHSRVQLAISAVQKLLLQGLGTVLGSKDIVGIYRTPAVDNHK 300
Query: 301 EFRYNLFKKQAEHTKCKRGNANVRYAWLACSKDAVDEMMLNGVMHFEKTVKCPDYGIGTI 360
EFRYNLFKKQAEHTKCKRGNANVRYAWLACSKDAVDEMMLNGVMHFEKTVKCPDYGIGTI
Sbjct: 301 EFRYNLFKKQAEHTKCKRGNANVRYAWLACSKDAVDEMMLNGVMHFEKTVKCPDYGIGTI 360
Query: 361 LAPANCSNTCVNYSDVDENGIVHMMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGVDDIKN 420
LAPANCSNTCVNYSDVDENGIVHMMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGVDDIKN
Sbjct: 361 LAPANCSNTCVNYSDVDENGIVHMMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGVDDIKN 420
Query: 421 PQHYIVWDMNVNSHIYSEFVVTIKLPSRVKDSPATEEDCHNXXXXXXXXXXXXXXXXXXQ 480
PQHYIVWDMNVNSHIYSEFVVTIKLPSRVKDSPATEEDCHN Q
Sbjct: 421 PQHYIVWDMNVNSHIYSEFVVTIKLPSRVKDSPATEEDCHNLSEVSSLILSSGSPDSVSQ 480
Query: 481 DMNLQASPALGGHYEAPMLGDKVERAPSTPWMPFSMLFAAISTKVSAENMDMVNSCYEEF 540
DMNLQASPALGGHYEAPMLGDKVERAPSTPWMPFSMLFAAISTKVSAENMDMVNSCYEEF
Sbjct: 481 DMNLQASPALGGHYEAPMLGDKVERAPSTPWMPFSMLFAAISTKVSAENMDMVNSCYEEF 540
Query: 541 KSKKISRVDLVKKLRHIVGDRMLISTIMRLQDKLPPMSRHEAPKHVGQDDG 591
KSKKISRVDLVKKLRHIVGDRMLISTIMRLQDKLPPMSRHEAPKHVGQDDG
Sbjct: 541 KSKKISRVDLVKKLRHIVGDRMLISTIMRLQDKLPPMSRHEAPKHVGQDDG 591
>Os03g0854800 PARP, catalytic domain containing protein
Length = 361
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 173/336 (51%), Positives = 229/336 (68%), Gaps = 13/336 (3%)
Query: 259 DHSRVQLAISAVQKLLLQGLGTVLGSKDIVGIYRTPAVDNHKEFRYNLFKKQAEHTKCKR 318
++ VQ A SAV+ LL QG G + KDI+GIYRTP +D RY+LF+K+ + TK +R
Sbjct: 33 NNQSVQRADSAVRNLLFQGSGHLFTEKDIIGIYRTPMLDQLGRSRYSLFQKEVQVTKNQR 92
Query: 319 GNANVRYAWLACSKDAVDEMMLNGVMHFEKTVKCPDYGIGTILAPANCSNTCVNYSDVDE 378
GNAN RYAWLAC+K ++EMM+NG + K ++ P YG+G LAPAN SN CV SD+DE
Sbjct: 93 GNANERYAWLACTKGTMEEMMMNGALEIAKPLQGPMYGVGAHLAPANSSNICVGLSDIDE 152
Query: 379 NGIVHMMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGVDDIKNPQHYIVWDMNVNSHIYSE 438
NGI+ MMLCRV+MGNVE+V GS Q +P++E FDSGVDD++ P+HYI+WD NV+ HIY+E
Sbjct: 153 NGIIRMMLCRVIMGNVEVVFPGSNQCQPTSESFDSGVDDLQRPKHYIIWDANVHKHIYAE 212
Query: 439 FVVTIKLP-SRVKDSPATEEDCHNXXXXXXXXXXXXXXXXXXQDMNLQASPALGGHYEAP 497
+ V IK+P D+ + + N +D +LQ + G +A
Sbjct: 213 YAVIIKVPYMNNGDTASNISEIRN----------SGALDNPTKDDSLQTIASSGDEQQAC 262
Query: 498 MLG-DKVERAPSTPWMPFSMLFAAISTKVSAENMDMVNSCYEEFKSKKISRVDLVKKLRH 556
MLG R+PS+PWMPFSMLFAAIS KV +MD+V+ YEEFK +KISR DLVK+LR
Sbjct: 263 MLGRAPSPRSPSSPWMPFSMLFAAISAKVPRSDMDLVHKYYEEFKRRKISRPDLVKQLRQ 322
Query: 557 IVGDRMLISTIMRLQDKLPPMSRHE-APKHVGQDDG 591
IVGD++L+ST++RLQ KLPPM+ E AP+ G+ G
Sbjct: 323 IVGDKLLVSTVVRLQQKLPPMAATEQAPRAPGRGGG 358
>Os04g0672200 Poly(ADP-ribose) polymerase, catalytic region domain containing
protein
Length = 959
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/517 (27%), Positives = 246/517 (47%), Gaps = 77/517 (14%)
Query: 63 CHFKMQIIQSYQNFMTSALPKRILLRQGGEWKDFPKQIVKLAHSDFRTKKTITEGEHQTH 122
C + + N++ S +P R++ + G W +FP+QI+K +FR+ K+
Sbjct: 48 CCTRPNLASDCVNYLKSGVPSRVMFYKQGSWHNFPEQIMKSLIEEFRSNKSSVVAVMDDE 107
Query: 123 LFLLDFVHMTFIDSKTGLQRPIAWIDENGKQYFPEFFIEDKTLYRKKELGN--GNNVYII 180
L+DF+ MT ++ K+ QR +AW D+ GK ++P F +++ K G+ G I+
Sbjct: 108 PVLVDFLSMTLVNLKSRKQRSVAWFDDTGKCFYPSLFFDEEADEVAKVGGDFEGATQGIM 167
Query: 181 VEPNGTQEMNDHFGTXXXXXXXXXXXXXTDDVSSPKRAKAERSVAGNKTGGVKETIGENE 240
++ VA + VK+ + E+
Sbjct: 168 LD----------------------------------------KVANSPPEVVKQVVLESS 187
Query: 241 PHALLPIPCRSLPQD----KLGDHSRVQLAISAVQKLLLQGLGTVLGSKDIVGIYRTPAV 296
P P+P + D K+ R Q L L G+G +I+ I+R
Sbjct: 188 P----PVPQKPATADILRKKIASVERGSEGFLFAQDLFLSGMGPFATPNNILHIHRYSPN 243
Query: 297 DNHKEFRYNLFKKQAEHTKCKRGNANVRYAWLACSKDAVDEMMLNGVMHFEKTVKCPDYG 356
D + R F+KQ TK +RG+ANVRY WL K+ + +++NG + K +
Sbjct: 244 DITAQCRLQAFEKQMMSTKEERGDANVRYGWLGSRKNDIVRILINGFGNNGKPAEKAGLS 303
Query: 357 IGTILAPANCSNTCVNYSDVDENGIVHMMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGVD 416
G L+P + + + V DVDE G+ +M+LCR+++GN+E V GS+ PS++ +DSGVD
Sbjct: 304 AGVYLSPEDRAFSSVGLCDVDEKGVQYMLLCRLILGNMEAVMPGSQDSFPSSDIYDSGVD 363
Query: 417 DIKNPQHYIVWDMNVNSHIYSEFVVTIKLPSRVKDSPATEEDCHNXXXXXXXXXXXXXXX 476
D NP+ Y++W ++++HI E++V+ +L S+V++
Sbjct: 364 DCSNPKCYVMWPSHLSTHIRLEYLVSFRLSSKVRN-----------------------YL 400
Query: 477 XXXQDMNLQASP---ALGGHYEAPMLGDKVERAPSTPWMPFSMLFAAISTKVSAENMDMV 533
+ + SP A+ P++ E P++PW+ F +LFA I +S+ +++
Sbjct: 401 LGLKGLWFHPSPKEVAVDISTLVPIMSGNAE-GPTSPWISFRVLFAMIQENISSVARELL 459
Query: 534 NSCYEEFKSKKISRVDLVKKLRHIVGDRMLISTIMRL 570
YEE K KI+R ++VK++ +VG+++L+ T+ RL
Sbjct: 460 FHHYEELKENKITREEMVKQMIILVGEKLLLETLKRL 496
>Os06g0248400 Poly(ADP-ribose) polymerase, catalytic region domain containing
protein
Length = 767
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 178/393 (45%), Gaps = 48/393 (12%)
Query: 63 CHFKMQIIQSYQNFMTSALPKRILLRQGGEWKDFPKQIVKLAHSDFRTKKTITEGEHQTH 122
C + + + N++ S LP RI + G W DFP++I++ F+ K+
Sbjct: 52 CCIQPNLAKDCVNYLKSGLPSRIAFYKQGAWCDFPQKIMESLVEGFKADKSSAVVVMDDQ 111
Query: 123 LFLLDFVHMTFIDSKTGLQRPIAWIDENGKQYFPE-FFIEDKTLYRKKELGNGNNVYIIV 181
L+DF+ MT ++ KT QR ++W+D GK +FP FF E RK +G+ + +
Sbjct: 112 PLLVDFLSMTMVNLKTRKQRSVSWLDGTGKWFFPSAFFDEGVDESRKLNMGSEGSGQGLT 171
Query: 182 E---PNGTQEMNDHFGTXXXXXXXXXXXXXTDDVSSPKRAKAERSVAGNKTGGVKETIGE 238
E P E+ VK+ + E
Sbjct: 172 EGMVPKAPNEL------------------------------------------VKQAVVE 189
Query: 239 NEPHALLPIPCRSLPQDKLGDHSRVQLAISAVQKLLLQGLGTVLGSKDIVGIYRTPAVDN 298
L + + K+ R + VQ L L G+G+ K+++ I+R A D
Sbjct: 190 TSSPVLQNSCIPDILRKKIVPVERGSESFQFVQNLFLSGMGSFASPKNLLHIHRYSAEDV 249
Query: 299 HKEFRYNLFKKQAEHTKCKRGNANVRYAWLACSKDAVDEMMLNGVMHFEKTVKCPDYGIG 358
+ R F +Q T+ K G A+VRY WL K + +++NG + +T D G
Sbjct: 250 TAQCRLESFARQMRLTRKKIGYADVRYGWLGSRKQDIVGVLINGFISTGQTSHSSDMRTG 309
Query: 359 TILAPANCSNTCVNYSDVDENGIVHMMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGVDDI 418
L+P N + T V DVDE G+ +M+LCR ++GN+ + GS+ S +DSGVD+
Sbjct: 310 VYLSPENRAFTSVGLCDVDEKGVQYMLLCRAILGNMGTIKPGSQDEFLS--IYDSGVDNC 367
Query: 419 KNPQHYIVWDMNVNSHIYSEFVVTIKLPSRVKD 451
NP +Y++W + +HI E++++ +L ++D
Sbjct: 368 SNPSYYVIWPSKLGTHISLEYLISFRLTPEIQD 400
>Os03g0230300 Poly(ADP-ribose) polymerase, catalytic region domain containing
protein
Length = 463
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/516 (23%), Positives = 204/516 (39%), Gaps = 93/516 (18%)
Query: 67 MQIIQSYQNFMTSALPKRILLRQGGEWKDFPKQIVKLAHSDFRTKKTITEGEHQTHLFLL 126
+ +++ +Q F S P R+L +GG W D ++V L F K + E +FL
Sbjct: 28 IPLLRGWQAFRRSGAPARLLCFEGGAWADVAGEVVGLLRRAFMEGKAVCEAACGGRVFLF 87
Query: 127 DFVHMTFIDSKTGLQRPIAWIDENGKQYFPEFFIEDKTLYRKKELGNGNNVYIIVEPNGT 186
DF+ M ID T + + WID+ G +FP + RK+E
Sbjct: 88 DFMRMVRIDEATAEEAALGWIDDRGACFFP---APEGGRKRKRE---------------- 128
Query: 187 QEMNDHFGTXXXXXXXXXXXXXTDDVSSPKRAKAERSVAGNKTGGVKETIGENEPHALLP 246
D G+ ++ AE + GV+E GE+ P A
Sbjct: 129 ---RDEAGSEVKGEDRRR-----------RQPAAEEEDGDEASSGVEERSGESRPEA--D 172
Query: 247 IPCRSLPQDKL-GDHSRVQLA---ISAVQKLLLQGLGTVLGSKDIVGIYRTPAVDNHKEF 302
P R + L G R+ A V+KL + + V ++ G+ T +
Sbjct: 173 EPDRKKARGTLWGKAVRLDEADKFYKVVEKLFVSRMAPVAAAR---GVAITAVHKVAQGP 229
Query: 303 RYNLFKKQAEHTKCKRG---NANVRYAWLACSKDAVDEMMLNGVMHFEKT----VKCPDY 355
R F Q + RG +N ++AW V + +G F +T + +
Sbjct: 230 RARAFHLQGQLLAAARGVGDGSNAKFAWYGAPAADVAAAVEHG---FGRTNGQFLGGRAH 286
Query: 356 GIGTILAPANCSNTCVNYSDVDENGIVHMMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGV 415
G G L+P + + DENG H++LCRV+MG E V S Q PS++ +DS V
Sbjct: 287 GDGVHLSPPQYPHASAMLTKPDENGEAHIVLCRVLMGRPEAVPASSPQFHPSSDEYDSAV 346
Query: 416 DDIKNPQHYIVWDMNVNSHIYSEFVVTIKLPSRVKDSPATEEDCHNXXXXXXXXXXXXXX 475
D+++NP+ Y+VW ++N+ I E+VV+ + P+ +
Sbjct: 347 DNLENPRWYVVWSTDMNTRILPEYVVSFRWPNLPQ------------------------- 381
Query: 476 XXXXQDMNLQASPALGGHYEAPMLGDKVERAPSTPWMPFSMLFAAISTKVSAENMDMVNS 535
++ S LG + P +P+ F ML I V + + +
Sbjct: 382 --------MEGSSGLGSKLKKP--------SPAATRDMFPMLLTEIQRFVPSPKLQTLQR 425
Query: 536 CYEEFKSKKISRVDLVKKLRHIVGDRMLISTIMRLQ 571
Y FK ++ + ++ LR +GD +L + +L+
Sbjct: 426 TYNCFKRGQMKKDQFIRFLRSHIGDNVLTTVAKKLR 461
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,087,696
Number of extensions: 820696
Number of successful extensions: 1649
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1644
Number of HSP's successfully gapped: 7
Length of query: 591
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 485
Effective length of database: 11,501,117
Effective search space: 5578041745
Effective search space used: 5578041745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)