Os03g0854800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PARP, catalytic domain containing protein.
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Os03g0854800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PARP, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.96 | 0.182 | 12.4 | 0.678 | 0.67 | -0.711 | -0.159 | 0.579 | 0.37 | 22.4 | 19.55 | 273 | -- | -- |
| 15.08 | 0.181 | 12.4 | 0.576 | 0.646 | -0.725 | -0.2 | -- | 0.341 | 22.4 | 18.19 | 232 | -- | -- |
| 14.98 | 0.18 | 12.4 | 0.694 | 0.642 | -0.742 | -- | 0.566 | 0.377 | 22.3 | 18.89 | 228 | -- | -- |
| 15.2 | 0.182 | 12.4 | 0.591 | 0.649 | -0.746 | -- | -- | 0.343 | 22.4 | 17.56 | 238 | -- | -- |
| 29.27 | 0.253 | 12.4 | 0.747 | -- | -1.13 | -- | 0.586 | 0.426 | -- | 17.6 | 8 | -- | -- |
| 22.76 | 0.224 | 12.4 | 0.407 | 0.694 | -- | -0.2 | -- | 0.221 | 23.8 | -- | -- | -- | -- |
| 22.93 | 0.224 | 12.4 | 0.415 | 0.695 | -- | -- | -- | 0.221 | 23.8 | -- | -- | -- | -- |
| 29.6 | 0.253 | 12.4 | 0.655 | -- | -1.1 | -- | -- | 0.4 | -- | 17.64 | 2 | -- | -- |
| 23.33 | 0.225 | 12.4 | -- | 0.673 | -0.468 | -- | -- | 0.245 | 22.9 | 19.86 | 255 | -- | -- |
| 53.29 | 0.341 | 12.4 | 0.436 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 27.47 | 0.245 | 12.4 | -- | 0.7 | -- | -- | -- | 0.175 | 23.9 | -- | -- | -- | -- |
| 40.13 | 0.296 | 12.4 | -- | -- | -0.9 | -- | -- | 0.305 | -- | 19 | 2 | -- | -- |
| 58.3 | 0.356 | 12.4 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 5 | 13.82 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 6 | 13.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 7 | 13.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 13.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 9 | 13.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 10 | 13.87 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 13 | 13.90 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 15 | 13.94 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 35 | 14.19 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 39 | 14.25 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 46 | 14.30 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 54 | 14.39 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 67 | 14.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 71 | 14.56 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 72 | 14.56 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 75 | 14.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 80 | 14.60 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 82 | 14.60 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 84 | 14.61 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 85 | 14.61 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 86 | 14.62 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 89 | 14.62 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 93 | 14.63 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 100 | 14.64 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 103 | 14.65 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 123 | 14.68 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 132 | 14.70 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 141 | 14.71 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 150 | 14.72 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 156 | 14.73 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 175 | 14.74 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 200 | 14.78 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 207 | 14.80 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 236 | 14.84 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 240 | 14.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 241 | 14.86 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 242 | 14.86 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 244 | 14.86 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 252 | 14.88 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 270 | 14.89 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 274 | 14.90 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 280 | 14.92 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 306 | 14.96 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 337 | 15.00 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 343 | 15.01 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 412 | 15.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 418 | 15.10 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 469 | 15.14 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 480 | 15.15 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 505 | 15.16 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 506 | 15.17 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 559 | 15.19 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 564 | 15.19 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 577 | 15.22 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 585 | 15.22 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 620 | 15.25 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 624 | 15.25 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 650 | 15.26 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 676 | 15.27 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 733 | 15.29 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 764 | 15.30 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 767 | 15.30 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 788 | 15.31 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 796 | 15.31 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 821 | 15.32 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 875 | 15.34 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 876 | 15.34 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 878 | 15.34 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 879 | 15.34 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 903 | 15.34 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 913 | 15.34 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 924 | 15.34 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 950 | 15.35 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 970 | 15.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 971 | 15.36 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 3 | NA |