Os04g0672200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Poly(ADP-ribose) polymerase, catalytic region domain containing protein.
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Os04g0672200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Poly(ADP-ribose) polymerase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.53 | 0.179 | 11.7 | 0.442 | 0.099 | 0.0392 | -0.00422 | -2.18 | 0.252 | 3.92 | 30.05 | 3961 | -- | -- |
| 14.76 | 0.179 | 11.6 | 0.838 | 0.114 | -0.197 | -0.124 | -- | 0.38 | 3.17 | 30.4 | 18723 | -- | -- |
| 14.51 | 0.177 | 11.7 | 0.458 | 0.0989 | 0.0473 | -- | -2.2 | 0.26 | 3.97 | 30.3 | 3967 | -- | -- |
| 14.57 | 0.178 | 11.6 | 0.847 | 0.0904 | -0.251 | -- | -- | 0.418 | 3.91 | 30.2 | 18228 | -- | -- |
| 15.01 | 0.18 | 11.7 | 0.447 | -- | 0.0906 | -- | -2.38 | 0.269 | -- | 30.8 | 3983 | -- | -- |
| 16.42 | 0.19 | 11.6 | 0.74 | 0.0816 | -- | -0.044 | -- | 0.296 | 4.06 | -- | -- | -- | -- |
| 16.42 | 0.19 | 11.6 | 0.741 | 0.0821 | -- | -- | -- | 0.296 | 4.34 | -- | -- | -- | -- |
| 14.99 | 0.18 | 11.6 | 0.849 | -- | -0.261 | -- | -- | 0.415 | -- | 30.37 | 19049 | -- | -- |
| 30.72 | 0.258 | 11.7 | -- | 0.101 | -0.0738 | -- | -- | 0.198 | 3.65 | 30.4 | 4261 | -- | -- |
| 16.79 | 0.191 | 11.6 | 0.744 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 30.89 | 0.26 | 11.6 | -- | 0.0962 | -- | -- | -- | 0.214 | 4.18 | -- | -- | -- | -- |
| 24.06 | 0.228 | 11.7 | -- | -- | 0.394 | -- | -- | 0.0615 | -- | 26.1 | 47520 | -- | -- |
| 31.39 | 0.262 | 11.6 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.01 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 13.07 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 29 | 13.14 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 30 | 13.15 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 31 | 13.15 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 34 | 13.15 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 41 | 13.16 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 43 | 13.40 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 60 | 13.61 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 110 | 13.86 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 169 | 13.94 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 172 | 13.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 176 | 13.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 179 | 13.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 241 | 14.05 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 244 | 14.07 | wind | 1.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 245 | 14.07 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 246 | 14.07 | wind | 1.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 298 | 14.11 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 307 | 14.12 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 331 | 14.14 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 349 | 14.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 364 | 14.17 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 374 | 14.19 | temperature | 30.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 381 | 14.20 | wind | 1.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 395 | 14.20 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 398 | 14.21 | temperature | 30.0 | 4320 | < th | dose independent | sin | 8 | NA |
| 427 | 14.21 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 434 | 14.21 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 461 | 14.22 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 464 | 14.23 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 472 | 14.24 | humidity | 80.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 473 | 14.24 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 483 | 14.25 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 484 | 14.25 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 522 | 14.26 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 530 | 14.27 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 537 | 14.27 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 539 | 14.27 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 543 | 14.27 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 544 | 14.28 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 560 | 14.28 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 581 | 14.29 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 617 | 14.29 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 639 | 14.30 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 640 | 14.30 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 641 | 14.30 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 648 | 14.30 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 649 | 14.30 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 667 | 14.30 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 694 | 14.31 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 699 | 14.31 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 701 | 14.31 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 703 | 14.31 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 727 | 14.31 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 739 | 14.31 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 742 | 14.31 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 743 | 14.31 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 746 | 14.31 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 749 | 14.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 777 | 14.32 | humidity | 80.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 778 | 14.32 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 791 | 14.32 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 836 | 14.32 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 861 | 14.33 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 884 | 14.33 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |