Os03g0230300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Poly(ADP-ribose) polymerase, catalytic region domain containing protein.
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Os03g0230300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Poly(ADP-ribose) polymerase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.27 | 0.528 | 9.53 | 1.18 | 1.51 | -1.31 | 1.05 | -0.134 | 0.0305 | 7.55 | 21.31 | 1527 | -- | -- |
| 126.31 | 0.523 | 9.53 | 1.21 | 1.51 | -1.3 | 1.05 | -- | 0.0379 | 7.55 | 21.34 | 1530 | -- | -- |
| 129.32 | 0.53 | 9.53 | 1.17 | 1.5 | -1.31 | -- | -0.166 | 0.0171 | 7.5 | 21.3 | 1530 | -- | -- |
| 129.31 | 0.53 | 9.53 | 1.24 | 1.51 | -1.31 | -- | -- | 0.0371 | 7.46 | 21.34 | 1530 | -- | -- |
| 228.33 | 0.704 | 9.55 | 1.27 | -- | -1.29 | -- | 0.279 | 0.115 | -- | 21.36 | 525 | -- | -- |
| 173.15 | 0.617 | 9.61 | 0.669 | 1.5 | -- | 1.11 | -- | -0.322 | 7.59 | -- | -- | -- | -- |
| 176.53 | 0.622 | 9.61 | 0.695 | 1.51 | -- | -- | -- | -0.325 | 7.51 | -- | -- | -- | -- |
| 227.22 | 0.702 | 9.56 | 1.16 | -- | -1.31 | -- | -- | 0.0623 | -- | 21.4 | 521 | -- | -- |
| 160.94 | 0.591 | 9.57 | -- | 1.53 | -0.851 | -- | -- | -0.162 | 7.34 | 22.1 | 1365 | -- | -- |
| 297.77 | 0.806 | 9.64 | 0.717 | -- | -- | -- | -- | -0.301 | -- | -- | -- | -- | -- |
| 189.25 | 0.644 | 9.63 | -- | 1.51 | -- | -- | -- | -0.402 | 7.48 | -- | -- | -- | -- |
| 235.33 | 0.714 | 9.58 | -- | -- | -1.11 | -- | -- | 0.0144 | -- | 25.3 | 413 | -- | -- |
| 311.34 | 0.824 | 9.66 | -- | -- | -- | -- | -- | -0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.98 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 7 | 117.90 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 9 | 118.08 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 13 | 118.40 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 22 | 118.86 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 46 | 120.08 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 16 |
| 50 | 120.19 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 64 | 120.60 | wind | 3 | 43200 | < th | dose dependent | sin | 10 | NA |
| 80 | 121.14 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 91 | 121.29 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 125 | 121.94 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 145 | 122.25 | wind | 9 | 14400 | < th | dose dependent | rect. | 22 | 15 |
| 148 | 122.28 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 168 | 122.44 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 184 | 122.60 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 189 | 122.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 192 | 122.70 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 198 | 122.74 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 223 | 122.95 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 255 | 123.15 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 267 | 123.23 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 301 | 123.46 | wind | 3 | 14400 | < th | dose independent | sin | 10 | NA |
| 302 | 123.46 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 305 | 123.50 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 307 | 123.51 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 363 | 123.86 | wind | 1 | 14400 | > th | dose dependent | sin | 7 | NA |
| 367 | 123.87 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 412 | 124.09 | wind | 3 | 14400 | > th | dose independent | sin | 10 | NA |
| 620 | 124.85 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 699 | 125.11 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 713 | 125.15 | wind | 3 | 43200 | < th | dose independent | sin | 3 | NA |
| 739 | 125.22 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 741 | 125.22 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 22 |
| 777 | 125.30 | wind | 3 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 827 | 125.43 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 836 | 125.44 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 837 | 125.44 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 929 | 125.65 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 947 | 125.68 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 954 | 125.70 | wind | 3 | 43200 | < th | dose dependent | no | NA | NA |