BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0540900 Os10g0540900|AK072078
(375 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0540900 Conserved hypothetical protein 778 0.0
Os10g0540300 Conserved hypothetical protein 264 7e-71
Os11g0648200 107 1e-23
Os12g0148600 Hypothetical protein 84 2e-16
Os11g0648400 Hypothetical protein 74 2e-13
Os10g0549850 Conserved hypothetical protein 71 1e-12
Os06g0136100 Conserved hypothetical protein 70 2e-12
>Os10g0540900 Conserved hypothetical protein
Length = 375
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/375 (100%), Positives = 375/375 (100%)
Query: 1 MAEDANAGRKSSTHLAQSPELHASLESHELYNIPITRGEGTLITELRKVMEELRVSYYAD 60
MAEDANAGRKSSTHLAQSPELHASLESHELYNIPITRGEGTLITELRKVMEELRVSYYAD
Sbjct: 1 MAEDANAGRKSSTHLAQSPELHASLESHELYNIPITRGEGTLITELRKVMEELRVSYYAD 60
Query: 61 TDEETREQLKQFWDDEFNAISSGETTIERDLKWMRKEVIEAFETYSEANVVDYELEDLSR 120
TDEETREQLKQFWDDEFNAISSGETTIERDLKWMRKEVIEAFETYSEANVVDYELEDLSR
Sbjct: 61 TDEETREQLKQFWDDEFNAISSGETTIERDLKWMRKEVIEAFETYSEANVVDYELEDLSR 120
Query: 121 QCLIFDDCGQPYHHYNFTMKSKRPDSDLESSTNCPDSDLESSTNLESCISRHYFAEVKLM 180
QCLIFDDCGQPYHHYNFTMKSKRPDSDLESSTNCPDSDLESSTNLESCISRHYFAEVKLM
Sbjct: 121 QCLIFDDCGQPYHHYNFTMKSKRPDSDLESSTNCPDSDLESSTNLESCISRHYFAEVKLM 180
Query: 181 DGKKHYFCCPLESFDNGHCHGCRNSGIDLKHPSNGGYEEGNAYSGLSFDDDEFDAISEET 240
DGKKHYFCCPLESFDNGHCHGCRNSGIDLKHPSNGGYEEGNAYSGLSFDDDEFDAISEET
Sbjct: 181 DGKKHYFCCPLESFDNGHCHGCRNSGIDLKHPSNGGYEEGNAYSGLSFDDDEFDAISEET 240
Query: 241 TKEKGIEWMREEVIEAFETYSNANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKCPN 300
TKEKGIEWMREEVIEAFETYSNANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKCPN
Sbjct: 241 TKEKGIEWMREEVIEAFETYSNANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKCPN 300
Query: 301 SDLESSTNVESCISRHYFAEVKLMDGEKHYFCCPLESFDNGHCHGCRNSGIDLKHPSNGG 360
SDLESSTNVESCISRHYFAEVKLMDGEKHYFCCPLESFDNGHCHGCRNSGIDLKHPSNGG
Sbjct: 301 SDLESSTNVESCISRHYFAEVKLMDGEKHYFCCPLESFDNGHCHGCRNSGIDLKHPSNGG 360
Query: 361 YEEGNADSGFSFDPI 375
YEEGNADSGFSFDPI
Sbjct: 361 YEEGNADSGFSFDPI 375
>Os10g0540300 Conserved hypothetical protein
Length = 260
Score = 264 bits (675), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 132/199 (66%), Positives = 155/199 (77%), Gaps = 21/199 (10%)
Query: 31 YNIPITRGEGTLITELRKVMEELRVSYYADTDEETREQLKQFWDDEFNAISSGETTIERD 90
YN I RGEGTL+ ELR+ E+LR+S+YA+TDEETR Q+KQFWD+EFNAIS E TIER
Sbjct: 81 YNT-IRRGEGTLMAELREATEQLRLSFYANTDEETRAQMKQFWDEEFNAISE-EATIERG 138
Query: 91 LKWMRKEVIEAFETYSEANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKRPDSDLES 150
L+WMR EV+EAF T+S ANVV+YELED+S QCLIFDDC + YHHYNF MKSK
Sbjct: 139 LEWMRAEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSYHHYNFIMKSK-------- 190
Query: 151 STNCPDSDLESSTNLESCISRHYFAEVKLMDGKKHYFCCPLESFDNGHCHGCRNSGIDLK 210
CPDS LE SC+ +FAEVK++DG+KHYFCCPL+ D+GHCHGC+NSGIDLK
Sbjct: 191 ---CPDSHLEG-----SCL---FFAEVKVVDGEKHYFCCPLQPDDDGHCHGCQNSGIDLK 239
Query: 211 HPSNGGYEEGNAYSGLSFD 229
HPS+GGYEEGNA SG FD
Sbjct: 240 HPSDGGYEEGNADSGFPFD 258
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/148 (72%), Positives = 125/148 (84%), Gaps = 8/148 (5%)
Query: 228 FDDDEFDAISEETTKEKGIEWMREEVIEAFETYSNANVVDYELEDLSRQCLIFDDCGQPY 287
F D+EF+AISEE T E+G+EWMR EV+EAF T+S ANVV+YELED+S QCLIFDDC + Y
Sbjct: 121 FWDEEFNAISEEATIERGLEWMRAEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSY 180
Query: 288 HHYNFTMKSKCPNSDLESSTNVESCISRHYFAEVKLMDGEKHYFCCPLESFDNGHCHGCR 347
HHYNF MKSKCP+S LE SC+ +FAEVK++DGEKHYFCCPL+ D+GHCHGC+
Sbjct: 181 HHYNFIMKSKCPDSHLEG-----SCL---FFAEVKVVDGEKHYFCCPLQPDDDGHCHGCQ 232
Query: 348 NSGIDLKHPSNGGYEEGNADSGFSFDPI 375
NSGIDLKHPS+GGYEEGNADSGF FDPI
Sbjct: 233 NSGIDLKHPSDGGYEEGNADSGFPFDPI 260
>Os11g0648200
Length = 359
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 14/142 (9%)
Query: 236 ISEETTKEKGIEWMREEVIEAFETYSNANV----VDYELEDLSRQCLIFDDCGQPYHHYN 291
+S E + G +WM EEV+ AF+ Y +Y LE L QC ++ + +HHYN
Sbjct: 222 VSLEEIADNGKKWMGEEVMVAFKNYIEGKPDLAGHEYRLE-LQHQCFNVENYYENFHHYN 280
Query: 292 FTMKSKCPNSDLESSTNVESCISRHYFAEVKLMDGEKHYFCCPLESFDNGHCHGCRNSGI 351
F +K K +SD + T YFAEVK++ K+YFCCPLE+ +NGHC+ CRN G+
Sbjct: 281 FNVKMKKYDSDDWNETI--------YFAEVKMIFRRKYYFCCPLEAPENGHCYACRNQGM 332
Query: 352 D-LKHPSNGGYEEGNADSGFSF 372
D L+HP+ GG+E G+ D+ F +
Sbjct: 333 DELRHPATGGFEIGSPDTAFPY 354
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 29/179 (16%)
Query: 59 ADTDEETREQLKQFWDDEFNAISSGETTIE----RDLKWMRKEVIEAFETYSEANV---- 110
D EE +Q + + + + E ++E KWM +EV+ AF+ Y E
Sbjct: 196 VDDQEELHQQALSQQNLQIHRLPRHEVSLEEIADNGKKWMGEEVMVAFKNYIEGKPDLAG 255
Query: 111 VDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKRPDSDLESSTNCPDSDLESSTNLESCIS 170
+Y LE L QC ++ + +HHYNF +K K+ DSD + T
Sbjct: 256 HEYRLE-LQHQCFNVENYYENFHHYNFNVKMKKYDSDDWNETI----------------- 297
Query: 171 RHYFAEVKLMDGKKHYFCCPLESFDNGHCHGCRNSGID-LKHPSNGGYEEGNAYSGLSF 228
YFAEVK++ +K+YFCCPLE+ +NGHC+ CRN G+D L+HP+ GG+E G+ + +
Sbjct: 298 --YFAEVKMIFRRKYYFCCPLEAPENGHCYACRNQGMDELRHPATGGFEIGSPDTAFPY 354
>Os12g0148600 Hypothetical protein
Length = 208
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 66/119 (55%), Gaps = 19/119 (15%)
Query: 255 EAFETYSNANV-------VDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKCPNSDLESST 307
EAF + N V +DY+ ++ C + YHHYNFT++ K
Sbjct: 79 EAFVAFRNYFVEKDVFEEIDYKFGEILHHCSRTVGIRKIYHHYNFTVEMK---------- 128
Query: 308 NVESC-ISRHYFAEVKLMDGEKHYFCCPLESFDNGHCHGCRNSGID-LKHPSNGGYEEG 364
N + C I R YFAEVK+ G K+ FC PLE+ D+G C+ C+N GID LKHPS GGY +G
Sbjct: 129 NDKDCWIPRVYFAEVKMKYGFKYRFCAPLEATDDGQCYSCKNQGIDKLKHPSRGGYSKG 187
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 27/130 (20%)
Query: 97 EVIEAFETY-SEANV---VDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKRPDSDLESST 152
E AF Y E +V +DY+ ++ C + YHHYNFT++ K
Sbjct: 79 EAFVAFRNYFVEKDVFEEIDYKFGEILHHCSRTVGIRKIYHHYNFTVEMK---------- 128
Query: 153 NCPDSDLESSTNLESC-ISRHYFAEVKLMDGKKHYFCCPLESFDNGHCHGCRNSGID-LK 210
N + C I R YFAEVK+ G K+ FC PLE+ D+G C+ C+N GID LK
Sbjct: 129 -----------NDKDCWIPRVYFAEVKMKYGFKYRFCAPLEATDDGQCYSCKNQGIDKLK 177
Query: 211 HPSNGGYEEG 220
HPS GGY +G
Sbjct: 178 HPSRGGYSKG 187
>Os11g0648400 Hypothetical protein
Length = 315
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 12/103 (11%)
Query: 243 EKGIEWMREEVIEAFETYSN----ANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKC 298
+ G +WM EEV+ AFE Y ++Y+L++L QCL + +HH+NF++K+K
Sbjct: 212 QNGNKWMGEEVMTAFEKYVEERDYLKGIEYKLDELCHQCLNVKNYNHIFHHFNFSVKTKT 271
Query: 299 PNSDLESSTNVESCISRHYFAEVKLMDGEKHYFCCPLESFDNG 341
P S S YFAEVK M +K YFC PLE +NG
Sbjct: 272 PGST--------DWTSELYFAEVKTMFRQKVYFCWPLEPNENG 306
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 23/110 (20%)
Query: 92 KWMRKEVIEAFETYSE----ANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKRPDSD 147
KWM +EV+ AFE Y E ++Y+L++L QCL + +HH+NF++K+K P S
Sbjct: 216 KWMGEEVMTAFEKYVEERDYLKGIEYKLDELCHQCLNVKNYNHIFHHFNFSVKTKTPGST 275
Query: 148 LESSTNCPDSDLESSTNLESCISRHYFAEVKLMDGKKHYFCCPLESFDNG 197
S YFAEVK M +K YFC PLE +NG
Sbjct: 276 -------------------DWTSELYFAEVKTMFRQKVYFCWPLEPNENG 306
>Os10g0549850 Conserved hypothetical protein
Length = 890
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 107/242 (44%), Gaps = 53/242 (21%)
Query: 107 EANVVDYELEDLS-RQCLIFDDCGQPYHHYNFTMKSKRPDSDLESSTNCPDSDLESSTNL 165
+ N++ ELE + ++ +F + + Y H+NF +K DSD +
Sbjct: 125 QKNILPAELEIMELKERSLFTERRKVYGHFNFLVK---------------DSDGTHTL-- 167
Query: 166 ESCISRHYFAEVKL--MDGKKHYFCCPLESFDNGHCHGCRNSGIDLKHPSNGGYEEGNAY 223
+FAEV L + K Y CCPLE DNGHC GCR + L+HP++ Y G+
Sbjct: 168 -------FFAEVDLNCKEEKDVYLCCPLEENDNGHCFGCREWDVALQHPTSADYLGGHKD 220
Query: 224 SGLSFDDDEFDAISEETTKEKGIEWMREEVIEAFETYSN--ANVVDYELEDLSRQCLIFD 281
F ++ EE I+ E S A + EL++ +R F
Sbjct: 221 ILFVFRQQLAPSVGSLAKVNAA-----EEKIDKKEGGSAEPAELEIMELKEYTR----FR 271
Query: 282 DCGQPYHHYNFTMKSKCPNSDLESSTNVESCISRHYFAEVKLMDGEKH--YFCCPLESFD 339
+ G+ Y HYNF +K D + + + +FAEV + E+ + CCPLE+ D
Sbjct: 272 EHGKVYGHYNFVVK------DSDGTLTL-------FFAEVDINCKEEKDVFLCCPLEAND 318
Query: 340 NG 341
NG
Sbjct: 319 NG 320
>Os06g0136100 Conserved hypothetical protein
Length = 408
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 16/110 (14%)
Query: 268 YELEDLSRQCLIFDDCGQPYHHYNFTMKSKCPNSDLESSTNVESC-ISRHYFAEVKLMDG 326
YEL+D + +I++D Q YHH NFT K K + C + +FAE+ M G
Sbjct: 251 YELKDFLQHGVIYEDQRQ-YHHLNFTAKVK----------RADGCGVENLFFAEISHMQG 299
Query: 327 EKHYF---CCPLESFDNGHCHGCRNSG-IDLKHPSNGGYEEGNADSGFSF 372
E + CC ++ NGHC+GCRN+G + +KHP+N Y G+ D F
Sbjct: 300 EYEWVVSCCCIIKPSANGHCYGCRNNGYVGMKHPNNDAYSGGHLDGYLPF 349
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 26/167 (15%)
Query: 72 FWDDEFNAISSGETTIERDLKWMRKEVIEAF-ETYSEANVVDYELEDLSRQCLIFDDCGQ 130
+W D E+D + + ++E + E ++ YEL+D + +I++D Q
Sbjct: 209 YWPDGKRKRCKSAGYFEKDKCHLIQALVEKYNEDHNLLGDFAYELKDFLQHGVIYEDQRQ 268
Query: 131 PYHHYNFTMKSKRPDSDLESSTNCPDSDLESSTNLESCISRHYFAEVKLMDGKKHYF--- 187
YHH NFT K KR D C +L +FAE+ M G+ +
Sbjct: 269 -YHHLNFTAKVKRAD-------GCGVENL-------------FFAEISHMQGEYEWVVSC 307
Query: 188 CCPLESFDNGHCHGCRNSG-IDLKHPSNGGYEEGNAYSGLSFDDDEF 233
CC ++ NGHC+GCRN+G + +KHP+N Y G+ L F + +
Sbjct: 308 CCIIKPSANGHCYGCRNNGYVGMKHPNNDAYSGGHLDGYLPFGVNSY 354
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,085,735
Number of extensions: 630019
Number of successful extensions: 1251
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 13
Length of query: 375
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 273
Effective length of database: 11,709,973
Effective search space: 3196822629
Effective search space used: 3196822629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)