BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0540300 Os10g0540300|AK066440
(260 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0540300 Conserved hypothetical protein 509 e-145
Os10g0540900 Conserved hypothetical protein 264 6e-71
Os11g0648200 109 2e-24
Os12g0148600 Hypothetical protein 80 2e-15
Os11g0648400 Hypothetical protein 77 2e-14
Os06g0136100 Conserved hypothetical protein 73 2e-13
>Os10g0540300 Conserved hypothetical protein
Length = 260
Score = 509 bits (1311), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/260 (94%), Positives = 246/260 (94%)
Query: 1 MADDAGAGXXXXXXXXXXXXXXSGQFLIRALLRGELEERTADARFIPLTPIMEDLFVSGI 60
MADDAGAG SGQFLIRALLRGELEERTADARFIPLTPIMEDLFVSGI
Sbjct: 1 MADDAGAGRTRSRRDPSDRPTRSGQFLIRALLRGELEERTADARFIPLTPIMEDLFVSGI 60
Query: 61 EEIPEDTSVHHQQTDEPPPSYNTIRRGEGTLMAELREATEQLRLSFYANTDEETRAQMKQ 120
EEIPEDTSVHHQQTDEPPPSYNTIRRGEGTLMAELREATEQLRLSFYANTDEETRAQMKQ
Sbjct: 61 EEIPEDTSVHHQQTDEPPPSYNTIRRGEGTLMAELREATEQLRLSFYANTDEETRAQMKQ 120
Query: 121 FWDEEFNAISEEATIERGLEWMRAEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSY 180
FWDEEFNAISEEATIERGLEWMRAEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSY
Sbjct: 121 FWDEEFNAISEEATIERGLEWMRAEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSY 180
Query: 181 HHYNFIMKSKCPDSHLEGSCLFFAEVKVVDGEKHYFCCPLQPDDDGHCHGCQNSGIDLKH 240
HHYNFIMKSKCPDSHLEGSCLFFAEVKVVDGEKHYFCCPLQPDDDGHCHGCQNSGIDLKH
Sbjct: 181 HHYNFIMKSKCPDSHLEGSCLFFAEVKVVDGEKHYFCCPLQPDDDGHCHGCQNSGIDLKH 240
Query: 241 PSDGGYEEGNADSGFPFDPI 260
PSDGGYEEGNADSGFPFDPI
Sbjct: 241 PSDGGYEEGNADSGFPFDPI 260
>Os10g0540900 Conserved hypothetical protein
Length = 375
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 130/195 (66%), Positives = 153/195 (78%), Gaps = 20/195 (10%)
Query: 84 IRRGEGTLMAELREATEQLRLSFYANTDEETRAQMKQFWDEEFNAISE-EATIERGLEWM 142
I RGEGTL+ ELR+ E+LR+S+YA+TDEETR Q+KQFWD+EFNAIS E TIER L+WM
Sbjct: 35 ITRGEGTLITELRKVMEELRVSYYADTDEETREQLKQFWDDEFNAISSGETTIERDLKWM 94
Query: 143 RAEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSYHHYNFIMKSK-----------C 191
R EV+EAF T+S ANVV+YELED+S QCLIFDDC + YHHYNF MKSK C
Sbjct: 95 RKEVIEAFETYSEANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKRPDSDLESSTNC 154
Query: 192 PDSHLEG-----SCL---FFAEVKVVDGEKHYFCCPLQPDDDGHCHGCQNSGIDLKHPSD 243
PDS LE SC+ +FAEVK++DG+KHYFCCPL+ D+GHCHGC+NSGIDLKHPS+
Sbjct: 155 PDSDLESSTNLESCISRHYFAEVKLMDGKKHYFCCPLESFDNGHCHGCRNSGIDLKHPSN 214
Query: 244 GGYEEGNADSGFPFD 258
GGYEEGNA SG FD
Sbjct: 215 GGYEEGNAYSGLSFD 229
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/148 (72%), Positives = 125/148 (84%), Gaps = 8/148 (5%)
Query: 121 FWDEEFNAISEEATIERGLEWMRAEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSY 180
F D+EF+AISEE T E+G+EWMR EV+EAF T+S ANVV+YELED+S QCLIFDDC + Y
Sbjct: 228 FDDDEFDAISEETTKEKGIEWMREEVIEAFETYSNANVVDYELEDLSRQCLIFDDCGQPY 287
Query: 181 HHYNFIMKSKCPDSHLEG-----SCL---FFAEVKVVDGEKHYFCCPLQPDDDGHCHGCQ 232
HHYNF MKSKCP+S LE SC+ +FAEVK++DGEKHYFCCPL+ D+GHCHGC+
Sbjct: 288 HHYNFTMKSKCPNSDLESSTNVESCISRHYFAEVKLMDGEKHYFCCPLESFDNGHCHGCR 347
Query: 233 NSGIDLKHPSDGGYEEGNADSGFPFDPI 260
NSGIDLKHPS+GGYEEGNADSGF FDPI
Sbjct: 348 NSGIDLKHPSNGGYEEGNADSGFSFDPI 375
>Os11g0648200
Length = 359
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 83/134 (61%), Gaps = 6/134 (4%)
Query: 129 ISEEATIERGLEWMRAEVVEAFSTHSGANV----VEYELEDISHQCLIFDDCAKSYHHYN 184
+S E + G +WM EV+ AF + EY LE + HQC ++ +++HHYN
Sbjct: 222 VSLEEIADNGKKWMGEEVMVAFKNYIEGKPDLAGHEYRLE-LQHQCFNVENYYENFHHYN 280
Query: 185 FIMKSKCPDSHLEGSCLFFAEVKVVDGEKHYFCCPLQPDDDGHCHGCQNSGID-LKHPSD 243
F +K K DS ++FAEVK++ K+YFCCPL+ ++GHC+ C+N G+D L+HP+
Sbjct: 281 FNVKMKKYDSDDWNETIYFAEVKMIFRRKYYFCCPLEAPENGHCYACRNQGMDELRHPAT 340
Query: 244 GGYEEGNADSGFPF 257
GG+E G+ D+ FP+
Sbjct: 341 GGFEIGSPDTAFPY 354
>Os12g0148600 Hypothetical protein
Length = 208
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 159 VEYELEDISHQCLIFDDCAKSYHHYNFIMKSKCPDSHLEGSCLFFAEVKVVDGEKHYFCC 218
++Y+ +I H C K YHHYNF ++ K D ++FAEVK+ G K+ FC
Sbjct: 97 IDYKFGEILHHCSRTVGIRKIYHHYNFTVEMK-NDKDCWIPRVYFAEVKMKYGFKYRFCA 155
Query: 219 PLQPDDDGHCHGCQNSGID-LKHPSDGGYEEG 249
PL+ DDG C+ C+N GID LKHPS GGY +G
Sbjct: 156 PLEATDDGQCYSCKNQGIDKLKHPSRGGYSKG 187
>Os11g0648400 Hypothetical protein
Length = 315
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 135 IERGLEWMRAEVVEAFSTH----SGANVVEYELEDISHQCLIFDDCAKSYHHYNFIMKSK 190
++ G +WM EV+ AF + +EY+L+++ HQCL + +HH+NF +K+K
Sbjct: 211 VQNGNKWMGEEVMTAFEKYVEERDYLKGIEYKLDELCHQCLNVKNYNHIFHHFNFSVKTK 270
Query: 191 CPDSHLEGSCLFFAEVKVVDGEKHYFCCPLQPDDDG 226
P S S L+FAEVK + +K YFC PL+P+++G
Sbjct: 271 TPGSTDWTSELYFAEVKTMFRQKVYFCWPLEPNENG 306
>Os06g0136100 Conserved hypothetical protein
Length = 408
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 161 YELEDISHQCLIFDDCAKSYHHYNFIMKSKCPDS-HLEGSCLFFAEVKVVDGEKHYF--- 216
YEL+D +I++D + YHH NF K K D +E LFFAE+ + GE +
Sbjct: 251 YELKDFLQHGVIYED-QRQYHHLNFTAKVKRADGCGVEN--LFFAEISHMQGEYEWVVSC 307
Query: 217 CCPLQPDDDGHCHGCQNSG-IDLKHPSDGGYEEGNADSGFPF 257
CC ++P +GHC+GC+N+G + +KHP++ Y G+ D PF
Sbjct: 308 CCIIKPSANGHCYGCRNNGYVGMKHPNNDAYSGGHLDGYLPF 349
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,444,742
Number of extensions: 402680
Number of successful extensions: 983
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 976
Number of HSP's successfully gapped: 9
Length of query: 260
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,866,615
Effective search space: 1910525015
Effective search space used: 1910525015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)