BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0536500 Os10g0536500|AK066849
         (172 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0536500  Conserved hypothetical protein                      224   2e-59
Os07g0469100  Similar to Thylakoid membrane phosphoprotein 1...   117   4e-27
Os08g0430600  Conserved hypothetical protein                       76   1e-14
Os02g0731600  Conserved hypothetical protein                       75   2e-14
Os06g0264800  Conserved hypothetical protein                       70   9e-13

>Os10g0536500 Conserved hypothetical protein
          Length = 172

 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 116/151 (76%)

Query: 22  EVKPAKRSVXXXXXXXXXXXXXXXSHGQPRVASFCKRLARXXXXXXXXXXXXXXXXXXXX 81
           EVKPAKRSV               SHGQPRVASFCKRLAR                    
Sbjct: 22  EVKPAKRSVGLGLPALPPLLPGLASHGQPRVASFCKRLARNVVAMAAGEAPAAPLAANAE 81

Query: 82  ITEFINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYS 141
           ITEFINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYS
Sbjct: 82  ITEFINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYS 141

Query: 142 GWFAYRNLLFKPDREAFFAKVREVYEDIISG 172
           GWFAYRNLLFKPDREAFFAKVREVYEDIISG
Sbjct: 142 GWFAYRNLLFKPDREAFFAKVREVYEDIISG 172



>Os07g0469100 Similar to Thylakoid membrane phosphoprotein 14 kDa, chloroplast
           precursor
          Length = 150

 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 68/88 (77%)

Query: 82  ITEFINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYS 141
           + E + A +  W ++EDKYAVT + VAA +G+W+A G + AIDRLP++PG++E VGIGY+
Sbjct: 58  VPEVVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDRLPLLPGVLELVGIGYT 117

Query: 142 GWFAYRNLLFKPDREAFFAKVREVYEDI 169
           GWF YRNL+F+PDREA  +K++  Y +I
Sbjct: 118 GWFTYRNLIFQPDREALVSKIKSTYNEI 145



>Os08g0430600 Conserved hypothetical protein
          Length = 159

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%)

Query: 85  FINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYSGWF 144
            ++ LK++WD IE+K +V      A + +W +  VV A+D +P++P ++E VG+GYSGWF
Sbjct: 70  ILSELKEKWDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWF 129

Query: 145 AYRNLLFKPDREAF 158
            YR LLFK +RE  
Sbjct: 130 VYRYLLFKENREEL 143



>Os02g0731600 Conserved hypothetical protein
          Length = 108

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 48/73 (65%)

Query: 84  EFINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYSGW 143
           E I  LK +WD +E+K  V T A  A + +W +  +V A++ +P++P  ME VG+GY+GW
Sbjct: 19  ELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGW 78

Query: 144 FAYRNLLFKPDRE 156
           F YR LLFK  R+
Sbjct: 79  FVYRYLLFKESRK 91



>Os06g0264800 Conserved hypothetical protein
          Length = 156

 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%)

Query: 84  EFINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYSGW 143
           E +  LK +W+ IEDK      +  A + +W    VV AI+ +P++P ++E VG+GY+GW
Sbjct: 67  ELVADLKAKWEAIEDKPTFLLYSGGAVVALWLTTVVVGAINSVPLLPKILELVGLGYTGW 126

Query: 144 FAYRNLLFKPDREAFFAKVREVYEDI 169
           F YR LLFK  R+     +  + + I
Sbjct: 127 FVYRYLLFKESRKELATDIETLKKKI 152



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,688,821
Number of extensions: 113884
Number of successful extensions: 263
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 5
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)