BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0532600 Os10g0532600|AK060309
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0532600 Protein of unknown function DUF623, plant doma... 276 9e-75
Os04g0577700 Protein of unknown function DUF623, plant doma... 100 1e-21
Os02g0679700 Protein of unknown function DUF623, plant doma... 95 7e-20
Os03g0126600 94 9e-20
Os01g0625900 Protein of unknown function DUF623, plant doma... 68 5e-12
Os01g0226700 Protein of unknown function DUF623, plant doma... 68 6e-12
Os05g0440900 Protein of unknown function DUF623, plant doma... 67 1e-11
>Os10g0532600 Protein of unknown function DUF623, plant domain containing protein
Length = 263
Score = 276 bits (707), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 151/263 (57%), Positives = 151/263 (57%)
Query: 1 MKVMTLXXXXXXXXXXXXXXXXXFMCGGCGGSKAVSVSDGSDKQSPMXXXXXXXXXXXXX 60
MKVMTL FMCGGCGGSKAVSVSDGSDKQSPM
Sbjct: 1 MKVMTLRRGGAGAGIRIKKKARGFMCGGCGGSKAVSVSDGSDKQSPMATPPPNTSSTTTT 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTPSVAALLRQLGELERSVRSLQ 120
GSTPSVAALLRQLGELERSVRSLQ
Sbjct: 61 TTTGSAGNKTTAAAGSSSFSPSYDYDYVDTDADTSVGSTPSVAALLRQLGELERSVRSLQ 120
Query: 121 GAVAEXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXXXDPLFDFRRSMLQMI 180
GAVAE T DPLFDFRRSMLQMI
Sbjct: 121 GAVAEGRGAKNDGRGGGRRHRRTVSDGGGGGSGRVEESVAVVKESADPLFDFRRSMLQMI 180
Query: 181 VEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAGYERTPDFLVSSRHRRP 240
VEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAGYERTPDFLVSSRHRRP
Sbjct: 181 VEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAGYERTPDFLVSSRHRRP 240
Query: 241 TKKKLPASYTAAXXXXXXSWNAA 263
TKKKLPASYTAA SWNAA
Sbjct: 241 TKKKLPASYTAADDDDDDSWNAA 263
>Os04g0577700 Protein of unknown function DUF623, plant domain containing protein
Length = 367
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/58 (79%), Positives = 48/58 (82%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAG 224
DP DFRRSML MIVE IV G ELRELLHRFL LN+PHHH ILRAFAEIW+EVFAG
Sbjct: 280 DPRGDFRRSMLNMIVENRIVTGDELRELLHRFLELNAPHHHDAILRAFAEIWDEVFAG 337
>Os02g0679700 Protein of unknown function DUF623, plant domain containing protein
Length = 281
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAGYE 226
DPL DFR+SMLQMIVE IV G +LRE+L RFL LN+PHHH VILRAFAEIW+ VFA
Sbjct: 180 DPLGDFRQSMLQMIVENGIVAGEDLREMLRRFLTLNAPHHHDVILRAFAEIWDGVFAATA 239
Query: 227 RTPDFLVSSRHRRPTKKK 244
LV H P+ ++
Sbjct: 240 S----LVHHHHPPPSSRR 253
>Os03g0126600
Length = 236
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAGYE 226
DPL DFRRSM QMIVE EI ELRELLHRFL LNS HHH+ILRAFA++ EE+FAG
Sbjct: 155 DPLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADVCEELFAGAG 214
Query: 227 RTPDFLVSSRHRRPTKKKLPASYT 250
+ RRPT K LP S T
Sbjct: 215 ---EHNHHRPRRRPT-KPLPYSAT 234
>Os01g0625900 Protein of unknown function DUF623, plant domain containing protein
Length = 366
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVF 222
+P DFR SM++M+VE+ I E+ ELL +L LNSP HH IL AF ++WE VF
Sbjct: 308 NPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEAVF 363
>Os01g0226700 Protein of unknown function DUF623, plant domain containing protein
Length = 250
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAG 224
DP DFR SM++M+V +++ G AEL LL +L LN+P HH VIL+AF++IW + G
Sbjct: 193 DPYADFRSSMVEMVVGRQLFGAAELERLLRSYLSLNAPRHHPVILQAFSDIWVVLHGG 250
>Os05g0440900 Protein of unknown function DUF623, plant domain containing protein
Length = 231
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 168 PLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIW 218
P DFR SM+ M+VEKE+ EL LLH+FL LNSP HH +IL AFA++W
Sbjct: 165 PYEDFRESMVAMVVEKEMYAWEELNALLHQFLTLNSPRHHALILHAFADLW 215
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,265,329
Number of extensions: 154959
Number of successful extensions: 429
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 7
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)