BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0445400 Os10g0445400|AK067013
(246 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0445400 Zinc finger, RING-type domain containing protein 446 e-125
Os10g0500000 Zinc finger, RING-type domain containing protein 265 2e-71
Os07g0661600 Similar to RNA-binding protein-like protein 265 3e-71
Os07g0275300 Zinc finger, RING-type domain containing protein 174 4e-44
Os01g0905700 Zinc finger, RING-type domain containing protein 155 2e-38
Os04g0679800 Similar to RNA-binding protein-like protein 137 7e-33
>Os10g0445400 Zinc finger, RING-type domain containing protein
Length = 246
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/246 (90%), Positives = 222/246 (90%)
Query: 1 MSCEFFLPSPXXXXXXXXXXXXCVWFISLFCRASEFLRDYDGAVIQMRMAYSAVAHFLVQ 60
MSCEFFLPSP CVWFISLFCRASEFLRDYDGAVIQMRMAYSAVAHFLVQ
Sbjct: 1 MSCEFFLPSPVAARGRWWWWGVCVWFISLFCRASEFLRDYDGAVIQMRMAYSAVAHFLVQ 60
Query: 61 WIDCKLAGALGLLKIMIYKVYADGTTALPEWEREASIRQFYGVIFPSLLQLPSGITELDD 120
WIDCKLAGALGLLKIMIYKVYADGTTALPEWEREASIRQFYGVIFPSLLQLPSGITELDD
Sbjct: 61 WIDCKLAGALGLLKIMIYKVYADGTTALPEWEREASIRQFYGVIFPSLLQLPSGITELDD 120
Query: 121 RKQRRLCLQKFRKVEERVSEVDLERELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKS 180
RKQRRLCLQKFRKVEERVSEVDLERELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKS
Sbjct: 121 RKQRRLCLQKFRKVEERVSEVDLERELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKS 180
Query: 181 KSCPFCRACLKKVNPSSLWLYTDDRDVVDMDTLTRENIRRLFMFISKXXXXXXXXXXXXI 240
KSCPFCRACLKKVNPSSLWLYTDDRDVVDMDTLTRENIRRLFMFISK I
Sbjct: 181 KSCPFCRACLKKVNPSSLWLYTDDRDVVDMDTLTRENIRRLFMFISKLPLVVLHVVDLDI 240
Query: 241 YEYRIK 246
YEYRIK
Sbjct: 241 YEYRIK 246
>Os10g0500000 Zinc finger, RING-type domain containing protein
Length = 242
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 120/202 (59%), Positives = 168/202 (83%), Gaps = 7/202 (3%)
Query: 33 ASEFLRDYDGAVIQMRMAYSAVAH---FLVQWIDCKLAGALGLLKIMIYKVYADGTTALP 89
ASEF R+YDGA +QMR++YS AH FLVQW DC LAGALGLL+I++YKVY DGTT +
Sbjct: 23 ASEFPREYDGACLQMRLSYSPAAHIFLFLVQWTDCSLAGALGLLRILVYKVYVDGTTTMS 82
Query: 90 EWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEER----VSEVDLER 145
ER+ASI++FY VIFPSLLQL GIT+ +D+KQ+ +C++++R+ +E +SE+D ER
Sbjct: 83 THERKASIKEFYAVIFPSLLQLQRGITDTEDKKQKAVCMERYRRRDEDERNILSEIDAER 142
Query: 146 ELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLYTDDR 205
E ECGIC+E+N+K+VLP+C H++C+RC++DWN++S+SCPFCR LKK +P LW+Y +D+
Sbjct: 143 EEECGICMEMNSKVVLPNCTHNMCLRCYQDWNSRSQSCPFCRDNLKKTDPGDLWIYVEDQ 202
Query: 206 DVVDMDTLTRENIRRLFMFISK 227
DVVD++T++REN+RRLFM+I+K
Sbjct: 203 DVVDLETVSRENLRRLFMYINK 224
>Os07g0661600 Similar to RNA-binding protein-like protein
Length = 242
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 117/202 (57%), Positives = 162/202 (80%), Gaps = 7/202 (3%)
Query: 33 ASEFLRDYDGAVIQMRMAYSAVAHF---LVQWIDCKLAGALGLLKIMIYKVYADGTTALP 89
A+EF R+YDGA +QMRM+Y AHF LVQW DC LAGALGLL+I+IYKVYADGTT +
Sbjct: 23 AAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCNLAGALGLLRILIYKVYADGTTTMS 82
Query: 90 EWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEER----VSEVDLER 145
ER+ASIR+FY VIFPSL+QL GI E++D+KQ+ +C++++R+ +E +SE+D
Sbjct: 83 AHERKASIREFYAVIFPSLMQLHEGINEVEDKKQKAICIERYRRRDEDQKMVISEIDDNI 142
Query: 146 ELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLYTDDR 205
E ECGIC+E+N K+VLP C+H++C++C+ DW ++S+SCPFCR LK+VN + LW+YTD+R
Sbjct: 143 EEECGICMEINGKVVLPTCSHAMCIKCYRDWRSRSQSCPFCRDSLKRVNSADLWIYTDNR 202
Query: 206 DVVDMDTLTRENIRRLFMFISK 227
D+VD+ T+ +EN+RRLFM+I K
Sbjct: 203 DIVDIATVRKENLRRLFMYIDK 224
>Os07g0275300 Zinc finger, RING-type domain containing protein
Length = 253
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 131/203 (64%), Gaps = 10/203 (4%)
Query: 33 ASEFLRDYDGAVIQMRMAYSAVAHF---LVQWIDC----KLAGALGLLKIMIYKVYADGT 85
A+ R+Y GA +QMR++ S++A F L+QW+DC L LGL I+I KVYADG
Sbjct: 31 ANAIQRNYGGACVQMRLSCSSLAPFFLYLIQWLDCGCCYALPSYLGLFHILICKVYADGD 90
Query: 86 TALPEWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEE---RVSEVD 142
+++ +ER AS+R+FY +I+P L QL + E D + + R RK E ++ D
Sbjct: 91 SSVSTYERRASLREFYAIIYPILQQLEGSLIERDLKGKGRCKDIVSRKRLEDWRKLCNKD 150
Query: 143 LERELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLYT 202
+ERE ECGIC+E K+VLP+C+H++C++C+ DW +S+SCPFCR LK++ LW+ T
Sbjct: 151 VEREDECGICMETCTKMVLPNCSHAMCIKCYRDWYRRSESCPFCRGSLKRIRSRDLWVLT 210
Query: 203 DDRDVVDMDTLTRENIRRLFMFI 225
+ DVVD TL REN+R + +I
Sbjct: 211 NYNDVVDPVTLERENVRHFYSYI 233
>Os01g0905700 Zinc finger, RING-type domain containing protein
Length = 252
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 127/226 (56%), Gaps = 14/226 (6%)
Query: 33 ASEFLRDYDGAVIQMRMAYSAVAHF---LVQWIDCK------LAGALGLLKIMIYKVYAD 83
A R Y GA +QMR++YS++A L+QW+DC L LGLL++++YKVY D
Sbjct: 28 AHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLSYTLPSYLGLLEVLVYKVYVD 87
Query: 84 GTTALP-EWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEER---VS 139
++ ER AS+++FY VI+P L QL + E D ++ C + R
Sbjct: 88 EDASISTNIERRASLKEFYAVIYPFLQQLEGNLME-KDCNEKGWCKEAASGGGGRKLYAD 146
Query: 140 EVDLERELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLW 199
+ D ERE ECGICLE K+VLP+C H++C+ C+ DW T+S+SCPFCR LK+V LW
Sbjct: 147 DKDDEREDECGICLETCTKMVLPNCNHAMCINCYRDWYTRSQSCPFCRGSLKRVRSRDLW 206
Query: 200 LYTDDRDVVDMDTLTRENIRRLFMFISKXXXXXXXXXXXXIYEYRI 245
+ T D DV+D TL +EN+R FI Y+Y +
Sbjct: 207 VLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVPDNLLLVYYDYLV 252
>Os04g0679800 Similar to RNA-binding protein-like protein
Length = 157
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 82/107 (76%), Gaps = 6/107 (5%)
Query: 33 ASEFLRDYDGAVIQMRMAYSAVAHF---LVQWIDCKLAGALGLLKIMIYKVYADGTTALP 89
AS+F RDYDGA +QMRM+YS A F LVQW DC LAGALGLL+I+IYKVY DGTT L
Sbjct: 28 ASDFSRDYDGACLQMRMSYSPAAQFFLFLVQWTDCSLAGALGLLRILIYKVYVDGTTTLS 87
Query: 90 EWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEE 136
ER+ASIR+FY VIFPSL+QL GI+++DDR+Q++ L R EE
Sbjct: 88 THERKASIREFYAVIFPSLMQLHKGISDVDDRRQKQSVL---RDTEE 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.141 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,523,226
Number of extensions: 288831
Number of successful extensions: 1217
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 6
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)