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Os07g0661600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA-binding protein-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.6 (0.0194) R2 : 0.58
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.12 (0.0462) R2dC : 0.544 R2C : 0.528
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.271 (0.0408) R2dN8 : 0.0524 R2N8 : 0.0362
σ : 0.366
deviance : 61.26
__
_____
C
peak time of C : 11.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.46 0.327 9.6 -0.211 1.15 0.597 -0.0667 0.498 0.271 11.8 69.24 1688 -- --
48.84 0.325 9.6 -0.159 1.15 0.632 -0.103 -- 0.28 11.9 69 1691 -- --
48.48 0.324 9.6 -0.214 1.15 0.598 -- 0.509 0.271 11.8 69.16 1691 -- --
48.79 0.325 9.59 -0.159 1.16 0.635 -- -- 0.318 11.9 70.23 1694 -- --
93.4 0.45 9.65 -0.208 -- 0.806 -- 0.771 0.369 -- 72.93 947 -- --
59.4 0.361 9.61 -0.264 1.12 -- -0.0294 -- 0.242 11.6 -- -- -- --
59.4 0.361 9.61 -0.265 1.12 -- -- -- 0.242 11.6 -- -- -- --
84.4 0.428 9.61 -0.107 -- 1.23 -- -- 0.331 -- 72.95 976 -- --
49.42 0.327 9.59 -- 1.16 0.661 -- -- 0.34 12 70.33 1711 -- --
138.05 0.549 9.63 -0.296 -- -- -- -- 0.229 -- -- -- -- --
61.26 0.366 9.6 -- 1.12 -- -- -- 0.271 11.6 -- -- -- --
84.69 0.429 9.61 -- -- 1.24 -- -- 0.344 -- 72.84 976 -- --
140.36 0.553 9.62 -- -- -- -- -- 0.262 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.14 radiation 1.0 90 > th dose independent sin 3 NA
2 44.46 radiation 1.0 90 < th dose independent rect. 3 8
5 44.52 radiation 1.0 90 < th dose independent sin 3 NA
10 44.75 radiation 1.0 90 < th dose dependent sin 3 NA
13 44.89 radiation 1.0 90 < th dose dependent rect. 3 8
28 45.10 radiation 10.0 90 < th dose dependent rect. 2 12
66 46.02 precipitation 0.1 30 < th dose independent rect. 2 4
68 46.02 precipitation 0.1 30 < th dose dependent rect. 2 4
73 46.08 humidity 90.0 10 < th dose independent rect. 6 6
84 46.20 wind 9.0 30 < th dose dependent rect. 6 6
89 46.28 humidity 90.0 10 < th dose independent rect. 6 8
93 46.31 radiation 30.0 30 < th dose dependent rect. 2 4
103 46.36 wind 7.0 10 < th dose independent rect. 2 4
105 46.36 temperature 20.0 10 > th dose independent rect. 6 6
109 46.38 atmosphere 995.0 30 > th dose independent rect. 6 20
122 46.44 temperature 10.0 30 > th dose independent rect. 2 4
124 46.44 temperature 30.0 30 < th dose independent rect. 2 4
125 46.44 humidity 50.0 30 > th dose independent rect. 2 4
128 46.44 atmosphere 995.0 30 > th dose independent rect. 2 4
129 46.44 atmosphere 1010.0 30 < th dose independent rect. 2 4
131 46.44 radiation 20.0 30 < th dose independent rect. 2 4
134 46.44 temperature 10.0 30 > th dose independent rect. 6 20
136 46.45 wind 9.0 1440 < th dose independent rect. 3 4
137 46.45 temperature 10.0 1440 > th dose independent rect. 3 4
140 46.45 temperature 30.0 1440 < th dose independent rect. 3 4
144 46.45 humidity 50.0 1440 > th dose independent rect. 3 4
149 46.45 atmosphere 995.0 1440 > th dose independent rect. 3 4
150 46.45 radiation 40.0 1440 < th dose independent rect. 3 4
154 46.45 temperature 10.0 1440 > th dose independent rect. 7 20
179 46.52 humidity 70.0 270 > th dose independent rect. 5 19
182 46.53 radiation 1.0 270 < th dose dependent rect. 23 12
183 46.53 wind 9.0 30 < th dose dependent rect. 6 20
226 46.61 humidity 50.0 30 > th dose dependent rect. 2 4
233 46.64 wind 9.0 30 < th dose independent rect. 6 20
234 46.64 atmosphere 1015.0 30 < th dose independent rect. 6 20
235 46.64 wind 9.0 30 < th dose dependent rect. 3 3
256 46.73 atmosphere 1015.0 1440 < th dose independent rect. 3 4
297 46.93 humidity 60.0 270 > th dose dependent rect. 5 19
300 46.97 humidity 50.0 30 > th dose independent rect. 12 18
309 47.01 precipitation 0.1 10 < th dose independent rect. 6 20
311 47.01 precipitation 0.1 10 < th dose dependent rect. 6 20
314 47.04 radiation 1.0 270 < th dose independent rect. 23 12
319 47.05 radiation 1.0 90 < th dose independent rect. 2 17
337 47.13 radiation 1.0 10 > th dose independent rect. 6 6
342 47.15 precipitation 0.1 10 < th dose independent rect. 12 18
345 47.15 precipitation 0.1 10 < th dose dependent rect. 12 18
380 47.26 humidity 80.0 10 > th dose dependent rect. 2 13
388 47.28 temperature 30.0 30 < th dose dependent rect. 2 4
400 47.32 humidity 70.0 720 > th dose independent rect. 14 11
414 47.44 wind 9.0 10 < th dose independent rect. 6 6
428 47.48 wind 9.0 30 < th dose dependent rect. 6 8
429 47.49 wind 3.0 30 < th dose independent rect. 6 6
430 47.49 wind 9.0 10 < th dose independent rect. 12 18
432 47.49 humidity 60.0 270 > th dose dependent rect. 15 9
434 47.50 radiation 40.0 30 < th dose dependent rect. 12 18
437 47.51 atmosphere 1015.0 10 < th dose dependent rect. 2 4
441 47.53 precipitation 0.1 10 < th dose independent rect. 6 6
444 47.53 precipitation 0.1 10 < th dose dependent rect. 6 6
447 47.55 radiation 1.0 270 < th dose independent rect. 23 8
452 47.57 atmosphere 995.0 270 > th dose independent rect. 4 21
470 47.62 temperature 10.0 10 > th dose independent rect. 6 6
472 47.62 atmosphere 995.0 10 > th dose independent rect. 6 6
473 47.62 atmosphere 1015.0 10 < th dose independent rect. 6 6
474 47.62 temperature 10.0 10 > th dose independent rect. 12 18
507 47.66 temperature 10.0 270 > th dose independent rect. 4 21
530 47.69 temperature 10.0 10 > th dose dependent rect. 6 6
566 47.74 temperature 10.0 30 > th dose dependent rect. 3 3
577 47.76 radiation 1.0 270 < th dose independent sin 8 NA
612 47.85 temperature 10.0 1440 > th dose independent rect. 7 6
615 47.85 atmosphere 995.0 1440 > th dose independent rect. 7 6
617 47.85 temperature 10.0 1440 > th dose independent rect. 13 18
641 47.92 atmosphere 1015.0 270 < th dose dependent rect. 1 2
657 47.93 wind 9.0 270 < th dose independent rect. 24 5
658 47.93 temperature 10.0 270 > th dose independent rect. 24 5
660 47.93 temperature 30.0 270 < th dose independent rect. 24 5
661 47.93 humidity 50.0 270 > th dose independent rect. 24 5
664 47.93 atmosphere 995.0 270 > th dose independent rect. 24 5
665 47.93 radiation 20.0 270 < th dose independent rect. 24 5
684 47.94 atmosphere 1010.0 270 < th dose independent rect. 24 5
688 47.94 humidity 70.0 720 > th dose independent rect. 14 18
691 47.94 humidity 50.0 270 > th dose dependent rect. 1 2
693 47.95 radiation 1.0 90 > th dose independent rect. 4 8
695 47.95 humidity 90.0 10 < th dose independent rect. 6 10
709 47.96 wind 1.0 270 > th dose independent rect. 1 2
724 47.98 atmosphere 1015.0 90 < th dose dependent rect. 3 2
735 48.02 wind 9.0 270 < th dose independent rect. 4 21
792 48.13 radiation 40.0 270 < th dose dependent rect. 14 10
843 48.17 atmosphere 995.0 10 > th dose dependent rect. 3 3
857 48.20 wind 1.0 270 > th dose independent rect. 24 5
860 48.20 wind 5.0 90 < th dose independent rect. 6 20
914 48.27 wind 1.0 270 > th dose independent rect. 9 10
925 48.28 humidity 80.0 10 > th dose dependent rect. 2 6
928 48.29 radiation 30.0 270 < th dose independent rect. 13 11
930 48.30 temperature 20.0 10 > th dose independent rect. 6 8
936 48.30 wind 9.0 30 < th dose dependent rect. 6 10
943 48.32 wind 1.0 10 > th dose independent rect. 6 6
971 48.33 atmosphere 1015.0 270 < th dose dependent rect. 24 5