BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0661600 Os07g0661600|AK066432
(242 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0661600 Similar to RNA-binding protein-like protein 478 e-135
Os10g0500000 Zinc finger, RING-type domain containing protein 349 8e-97
Os10g0445400 Zinc finger, RING-type domain containing protein 253 1e-67
Os07g0275300 Zinc finger, RING-type domain containing protein 233 7e-62
Os01g0905700 Zinc finger, RING-type domain containing protein 215 3e-56
Os04g0679800 Similar to RNA-binding protein-like protein 186 9e-48
>Os07g0661600 Similar to RNA-binding protein-like protein
Length = 242
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/242 (95%), Positives = 230/242 (95%)
Query: 1 MGRSFRDSLKVLEADIQHANSLAAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCNXX 60
MGRSFRDSLKVLEADIQHANSLAAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCN
Sbjct: 1 MGRSFRDSLKVLEADIQHANSLAAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCNLA 60
Query: 61 XXXXXXXXXXYKVYADGTTTMSAHERKASIREFYAVIFPSLMQLHEGINEVEDKKQKAIC 120
YKVYADGTTTMSAHERKASIREFYAVIFPSLMQLHEGINEVEDKKQKAIC
Sbjct: 61 GALGLLRILIYKVYADGTTTMSAHERKASIREFYAVIFPSLMQLHEGINEVEDKKQKAIC 120
Query: 121 IERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKCYRDWRSRSQSC 180
IERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKCYRDWRSRSQSC
Sbjct: 121 IERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKCYRDWRSRSQSC 180
Query: 181 PFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVIPETVFDVYDSH 240
PFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVIPETVFDVYDSH
Sbjct: 181 PFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVIPETVFDVYDSH 240
Query: 241 VK 242
VK
Sbjct: 241 VK 242
>Os10g0500000 Zinc finger, RING-type domain containing protein
Length = 242
Score = 349 bits (896), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 164/242 (67%), Positives = 202/242 (83%)
Query: 1 MGRSFRDSLKVLEADIQHANSLAAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCNXX 60
M ++++DS KVLEADIQHAN+LA+EF REYDGACLQMR+SY PAAH FLFLVQWTDC+
Sbjct: 1 MRKAYKDSFKVLEADIQHANTLASEFPREYDGACLQMRLSYSPAAHIFLFLVQWTDCSLA 60
Query: 61 XXXXXXXXXXYKVYADGTTTMSAHERKASIREFYAVIFPSLMQLHEGINEVEDKKQKAIC 120
YKVY DGTTTMS HERKASI+EFYAVIFPSL+QL GI + EDKKQKA+C
Sbjct: 61 GALGLLRILVYKVYVDGTTTMSTHERKASIKEFYAVIFPSLLQLQRGITDTEDKKQKAVC 120
Query: 121 IERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKCYRDWRSRSQSC 180
+ERYRRRDED++ ++SEID EEECGICME+N KVVLP C+H MC++CY+DW SRSQSC
Sbjct: 121 MERYRRRDEDERNILSEIDAEREEECGICMEMNSKVVLPNCTHNMCLRCYQDWNSRSQSC 180
Query: 181 PFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVIPETVFDVYDSH 240
PFCRD+LK+ + DLWIY +++D+VD+ TV +ENLRRLFMYI+KLP ++P+ +F +YDSH
Sbjct: 181 PFCRDNLKKTDPGDLWIYVEDQDVVDLETVSRENLRRLFMYINKLPLIVPDVIFSIYDSH 240
Query: 241 VK 242
+K
Sbjct: 241 IK 242
>Os10g0445400 Zinc finger, RING-type domain containing protein
Length = 246
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 161/221 (72%), Gaps = 8/221 (3%)
Query: 23 AAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCNXXXXXXXXXXXXYKVYADGTTTMS 82
A+EF R+YDGA +QMRM+Y AHF LVQW DC YKVYADGTT +
Sbjct: 33 ASEFLRDYDGAVIQMRMAYSAVAHF---LVQWIDCKLAGALGLLKIMIYKVYADGTTALP 89
Query: 83 AHERKASIREFYAVIFPSLMQLHEGINEVEDKKQKAICIERYRRRDEDQKMVISEIDDNI 142
ER+ASIR+FY VIFPSL+QL GI E++D+KQ+ +C++++R+ +E +SE+D
Sbjct: 90 EWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEER----VSEVDLER 145
Query: 143 EEECGICMEINGKVVLPTCSHAMCIKCYRDWRSRSQSCPFCRDSLKRVNSADLWIYTDNR 202
E ECGIC+E+N K+VLP C+H++C++C+ DW ++S+SCPFCR LK+VN + LW+YTD+R
Sbjct: 146 ELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLYTDDR 205
Query: 203 DIVDIATVRKENLRRLFMYIDKLPTVIPETV-FDVYDSHVK 242
D+VD+ T+ +EN+RRLFM+I KLP V+ V D+Y+ +K
Sbjct: 206 DVVDMDTLTRENIRRLFMFISKLPLVVLHVVDLDIYEYRIK 246
>Os07g0275300 Zinc finger, RING-type domain containing protein
Length = 253
Score = 233 bits (595), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 159/244 (65%), Gaps = 9/244 (3%)
Query: 1 MGR--SFRDSLKVLEADIQHANSLAAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCN 58
+GR R LK LEADI HAN++A +R Y GAC+QMR+S A FFL+L+QW DC
Sbjct: 7 LGRQLPLRGPLKALEADIHHANTMANAIQRNYGGACVQMRLSCSSLAPFFLYLIQWLDCG 66
Query: 59 XXXXXXXXXXXXY----KVYADGTTTMSAHERKASIREFYAVIFPSLMQLHEGINEVEDK 114
+ KVYADG +++S +ER+AS+REFYA+I+P L QL + E D
Sbjct: 67 CCYALPSYLGLFHILICKVYADGDSSVSTYERRASLREFYAIIYPILQQLEGSLIE-RDL 125
Query: 115 KQKAICIERY-RRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKCYRDW 173
K K C + R+R ED + + ++ D E+ECGICME K+VLP CSHAMCIKCYRDW
Sbjct: 126 KGKGRCKDIVSRKRLEDWRKLCNK-DVEREDECGICMETCTKMVLPNCSHAMCIKCYRDW 184
Query: 174 RSRSQSCPFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVIPETV 233
RS+SCPFCR SLKR+ S DLW+ T+ D+VD T+ +EN+R + YID LP ++P+ +
Sbjct: 185 YRRSESCPFCRGSLKRIRSRDLWVLTNYNDVVDPVTLERENVRHFYSYIDSLPLILPDNI 244
Query: 234 FDVY 237
F Y
Sbjct: 245 FFFY 248
>Os01g0905700 Zinc finger, RING-type domain containing protein
Length = 252
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 149/241 (61%), Gaps = 9/241 (3%)
Query: 4 SFRDSLKVLEADIQHANSLAAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCNXXXXX 63
S R SLK LEADI HAN+LA R Y GAC+QMR+SY A L L+QW DC+
Sbjct: 9 SLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLSY 68
Query: 64 XXXX------XXXYKVYADGTTTMSAH-ERKASIREFYAVIFPSLMQLHEGINEVEDKKQ 116
YKVY D ++S + ER+AS++EFYAVI+P L QL + E +D +
Sbjct: 69 TLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNLME-KDCNE 127
Query: 117 KAICIERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKCYRDWRSR 176
K C E +K+ + DD E+ECGIC+E K+VLP C+HAMCI CYRDW +R
Sbjct: 128 KGWCKEA-ASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCYRDWYTR 186
Query: 177 SQSCPFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVIPETVFDV 236
SQSCPFCR SLKRV S DLW+ T + D++D T+ KEN+R +ID LP ++P+ + V
Sbjct: 187 SQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVPDNLLLV 246
Query: 237 Y 237
Y
Sbjct: 247 Y 247
>Os04g0679800 Similar to RNA-binding protein-like protein
Length = 157
Score = 186 bits (473), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 106/133 (79%), Gaps = 5/133 (3%)
Query: 1 MGRSFRDSLKVLEADIQHANSLAAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCNXX 60
M +SF+DSLKVLEADIQHAN+LA++F R+YDGACLQMRMSY PAA FFLFLVQWTDC+
Sbjct: 6 MRKSFKDSLKVLEADIQHANTLASDFSRDYDGACLQMRMSYSPAAQFFLFLVQWTDCSLA 65
Query: 61 XXXXXXXXXXYKVYADGTTTMSAHERKASIREFYAVIFPSLMQLHEGINEVEDKKQKAIC 120
YKVY DGTTT+S HERKASIREFYAVIFPSLMQLH+GI++V+D++QK
Sbjct: 66 GALGLLRILIYKVYVDGTTTLSTHERKASIREFYAVIFPSLMQLHKGISDVDDRRQKQSV 125
Query: 121 IERYRRRDEDQKM 133
+ RD +++M
Sbjct: 126 L-----RDTEEEM 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,643,373
Number of extensions: 290053
Number of successful extensions: 1287
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1282
Number of HSP's successfully gapped: 6
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)