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Os01g0905700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0222) R2 : 0.000984
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0314 (0.0468) R2dN8 : 0.00127 R2N8 : 0.000984
σ : 0.419
deviance : 80.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.29 0.368 12 -0.4 0.255 0.473 0.148 -1.04 -0.0925 11.2 19.97 10 -- --
64.29 0.373 12 -0.36 0.265 0.461 1.04 -- -0.0888 11.4 18.69 7 -- --
61.35 0.365 12 -0.394 0.251 0.468 -- -1.1 -0.103 11.3 19.98 9 -- --
68.13 0.384 11.9 -0.347 0.255 0.481 -- -- -0.0987 11.3 19.98 9 -- --
64.57 0.374 11.9 -0.367 -- 0.432 -- -1.13 -0.0908 -- 19.97 12 -- --
72.64 0.4 12 -0.37 0.136 -- -0.951 -- -0.075 0.527 -- -- -- --
76.32 0.409 12 -0.336 0.153 -- -- -- -0.0716 2.12 -- -- -- --
70.24 0.39 12 -0.315 -- 0.42 -- -- -0.0609 -- 29.75 46 -- --
71.15 0.393 11.9 -- 0.258 0.485 -- -- -0.0704 11.2 19.93 9 -- --
77.72 0.412 11.9 -0.329 -- -- -- -- -0.0679 -- -- -- -- --
79.29 0.417 11.9 -- 0.147 -- -- -- -0.0342 2.06 -- -- -- --
73.08 0.398 11.9 -- -- 0.401 -- -- -0.0413 -- 25.13 45 -- --
80.58 0.419 11.9 -- -- -- -- -- -0.0314 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.80 temperature 15.0 270 > th dose dependent rect. 3 6
6 56.71 temperature 20.0 270 > th dose independent rect. 5 2
7 56.76 temperature 20.0 270 > th dose dependent rect. 5 2
18 57.60 radiation 40.0 10 < th dose dependent rect. 6 5
19 57.63 temperature 20.0 270 > th dose independent rect. 3 6
25 57.92 radiation 20.0 10 < th dose independent rect. 6 14
27 58.03 radiation 20.0 10 < th dose independent rect. 6 4
31 58.38 radiation 20.0 10 < th dose independent rect. 6 16
45 59.10 radiation 40.0 10 < th dose dependent rect. 6 14
47 59.16 radiation 20.0 10 < th dose independent rect. 3 23
55 59.44 radiation 10.0 30 > th dose independent rect. 9 7
61 59.54 radiation 30.0 270 < th dose independent rect. 3 6
65 59.66 humidity 80.0 270 > th dose independent rect. 3 5
73 59.98 humidity 70.0 90 > th dose independent rect. 5 4
76 60.01 radiation 40.0 10 < th dose dependent rect. 6 16
80 60.08 radiation 10.0 270 < th dose independent rect. 5 2
84 60.13 atmosphere 1000.0 90 > th dose independent rect. 9 20
86 60.14 humidity 80.0 270 > th dose independent rect. 5 2
87 60.15 radiation 20.0 10 < th dose independent rect. 6 8
89 60.17 radiation 20.0 10 < th dose independent rect. 12 23
105 60.25 humidity 50.0 10 > th dose dependent rect. 6 14
106 60.26 temperature 25.0 10 > th dose independent rect. 6 3
110 60.29 atmosphere 1000.0 270 > th dose independent rect. 7 20
122 60.38 radiation 10.0 10 > th dose independent rect. 9 9
138 60.42 radiation 20.0 10 < th dose independent rect. 16 18
139 60.46 atmosphere 995.0 270 > th dose dependent rect. 3 4
140 60.47 radiation 20.0 10 < th dose independent rect. 6 12
141 60.47 radiation 30.0 90 < th dose independent rect. 13 22
144 60.49 wind 1.0 270 > th dose independent rect. 3 5
151 60.54 radiation 40.0 270 < th dose dependent rect. 3 6
155 60.57 atmosphere 1000.0 30 > th dose dependent rect. 6 3
175 60.69 atmosphere 995.0 90 > th dose dependent rect. 9 20
180 60.74 radiation 40.0 10 < th dose dependent rect. 3 23
182 60.78 atmosphere 1000.0 10 > th dose independent rect. 9 21
187 60.80 humidity 50.0 10 > th dose dependent rect. 6 5
210 60.95 radiation 40.0 10 < th dose dependent rect. 12 23
241 61.07 atmosphere 995.0 10 > th dose dependent rect. 11 19
256 61.15 humidity 70.0 10 > th dose independent rect. 6 14
264 61.22 radiation 10.0 270 < th dose dependent rect. 5 1
278 61.31 radiation 20.0 10 < th dose independent sin 0 NA
281 61.32 radiation 30.0 10 < th dose dependent rect. 6 11
289 61.38 radiation 20.0 10 < th dose independent rect. 21 23
292 61.40 radiation 20.0 10 < th dose independent rect. 1 23
299 61.41 radiation 20.0 10 < th dose independent rect. 3 21
318 61.43 humidity 90.0 10 < th dose dependent rect. 9 7
320 61.44 precipitation 0.1 270 < th dose independent rect. 3 4
323 61.44 precipitation 0.1 270 < th dose dependent rect. 3 4
324 61.44 humidity 50.0 270 > th dose dependent rect. 3 5
325 61.46 radiation 1.0 90 > th dose independent rect. 18 15
327 61.47 wind 9.0 270 < th dose independent rect. 3 4
328 61.47 temperature 10.0 270 > th dose independent rect. 3 4
330 61.47 temperature 30.0 270 < th dose independent rect. 3 4
331 61.47 humidity 50.0 270 > th dose independent rect. 3 4
333 61.47 atmosphere 995.0 270 > th dose independent rect. 3 4
334 61.47 atmosphere 1015.0 270 < th dose independent rect. 3 4
336 61.47 temperature 10.0 270 > th dose independent rect. 7 20
337 61.47 precipitation 0.1 270 < th dose independent rect. 7 20
339 61.47 precipitation 0.1 270 < th dose dependent rect. 7 20
363 61.56 humidity 90.0 30 < th dose independent rect. 6 3
364 61.56 atmosphere 1005.0 30 > th dose independent rect. 6 3
366 61.56 radiation 1.0 30 > th dose dependent rect. 9 7
368 61.58 radiation 1.0 90 > th dose independent rect. 4 5
389 61.59 radiation 20.0 10 < th dose independent rect. 6 20
392 61.60 radiation 20.0 10 < th dose independent rect. 15 23
410 61.64 radiation 30.0 270 < th dose dependent rect. 5 2
415 61.66 humidity 60.0 90 > th dose independent rect. 5 6
436 61.69 radiation 20.0 10 < th dose independent no NA NA
456 61.74 humidity 50.0 270 > th dose dependent rect. 5 2
463 61.76 atmosphere 1000.0 10 > th dose independent rect. 11 19
465 61.76 wind 9.0 10 < th dose dependent rect. 6 3
506 61.86 humidity 90.0 270 < th dose independent rect. 6 1
517 61.86 wind 7.0 10 < th dose independent rect. 6 3
520 61.86 temperature 10.0 10 > th dose independent rect. 6 3
524 61.86 temperature 30.0 10 < th dose independent rect. 6 3
526 61.86 humidity 50.0 10 > th dose independent rect. 6 3
530 61.86 atmosphere 995.0 10 > th dose independent rect. 6 3
532 61.86 atmosphere 1015.0 10 < th dose independent rect. 6 3
535 61.86 temperature 10.0 10 > th dose independent rect. 9 21
545 61.88 precipitation 0.1 10 < th dose independent rect. 6 3
548 61.88 precipitation 0.1 10 < th dose dependent rect. 6 3
552 61.89 temperature 10.0 1440 > th dose independent rect. 7 3
555 61.89 atmosphere 995.0 1440 > th dose independent rect. 7 3
556 61.89 atmosphere 1015.0 1440 < th dose independent rect. 7 3
558 61.89 temperature 10.0 1440 > th dose independent rect. 10 21
565 61.91 wind 3.0 10 < th dose independent rect. 6 3
573 61.93 radiation 1.0 30 > th dose dependent rect. 9 21
575 61.94 humidity 50.0 270 > th dose independent rect. 7 20
615 62.07 humidity 50.0 10 > th dose independent rect. 6 14
616 62.07 humidity 50.0 10 > th dose dependent rect. 6 16
617 62.08 humidity 70.0 10 > th dose independent rect. 6 11
619 62.08 radiation 20.0 10 < th dose independent rect. 23 23
623 62.09 wind 9.0 270 < th dose independent rect. 7 20
625 62.09 radiation 30.0 10 < th dose dependent rect. 6 18
643 62.14 humidity 60.0 90 > th dose independent rect. 5 15
652 62.16 radiation 20.0 10 > th dose independent rect. 11 23
666 62.18 radiation 1.0 30 > th dose dependent rect. 9 10
681 62.19 wind 1.0 270 > th dose independent rect. 13 19
704 62.22 radiation 40.0 10 < th dose dependent rect. 16 19
705 62.23 precipitation 0.1 10 < th dose independent rect. 9 21
707 62.23 precipitation 0.1 10 < th dose dependent rect. 9 21
719 62.26 atmosphere 1000.0 90 > th dose independent rect. 9 6
752 62.33 radiation 1.0 90 > th dose independent sin 10 NA
753 62.33 radiation 1.0 270 > th dose independent rect. 6 1
760 62.34 humidity 70.0 10 > th dose independent rect. 6 16
771 62.35 humidity 70.0 10 > th dose independent rect. 6 8
792 62.39 radiation 10.0 10 > th dose independent sin 21 NA
794 62.39 atmosphere 1000.0 270 > th dose independent rect. 18 9
806 62.41 wind 9.0 10 < th dose independent rect. 9 21
808 62.42 radiation 10.0 30 > th dose independent rect. 11 5
836 62.48 wind 1.0 30 > th dose independent rect. 6 14
838 62.49 humidity 80.0 10 < th dose independent rect. 9 7
868 62.52 radiation 30.0 10 < th dose dependent sin 0 NA
878 62.55 temperature 25.0 10 > th dose independent rect. 2 9
889 62.57 humidity 90.0 270 < th dose dependent rect. 24 13
892 62.58 humidity 80.0 270 > th dose independent rect. 3 11
894 62.58 wind 9.0 270 < th dose dependent rect. 5 2
901 62.59 humidity 50.0 270 > th dose dependent rect. 3 14
915 62.61 radiation 20.0 10 < th dose independent rect. 19 23
922 62.62 atmosphere 995.0 270 > th dose dependent rect. 9 3
924 62.62 humidity 90.0 10 < th dose dependent rect. 11 5
952 62.67 humidity 50.0 1440 > th dose independent rect. 7 3
981 62.71 humidity 80.0 270 > th dose independent rect. 3 16
993 62.72 humidity 80.0 10 < th dose dependent rect. 5 11
999 62.73 humidity 90.0 270 < th dose dependent rect. 9 4