BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0905700 Os01g0905700|AK060020
(252 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13195.1 | chr1:4501778-4503347 REVERSE LENGTH=261 219 9e-58
AT1G24440.1 | chr1:8662340-8663777 FORWARD LENGTH=252 216 7e-57
AT5G01520.1 | chr5:206797-208399 FORWARD LENGTH=243 214 4e-56
AT3G47160.2 | chr3:17360238-17361879 REVERSE LENGTH=258 211 4e-55
AT5G58787.1 | chr5:23742733-23744324 FORWARD LENGTH=243 204 3e-53
AT1G23980.1 | chr1:8484879-8485988 REVERSE LENGTH=370 47 1e-05
>AT1G13195.1 | chr1:4501778-4503347 REVERSE LENGTH=261
Length = 260
Score = 219 bits (559), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 152/232 (65%), Gaps = 6/232 (2%)
Query: 13 SLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLSYTLPS 72
SLK LEAD+ HAN+LA AI +QM+L +S+ A ++L L++W+D S S +P
Sbjct: 19 SLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSC--LIPR 76
Query: 73 YLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNLMEKDCNEKGWCK 132
YL L VLVYKV D ++T+ R+A++ EFY VI P LQ L NL E + + G+
Sbjct: 77 YLNLFHVLVYKVQSDGQPKLTTH-GRKATISEFYGVILPSLQLLHSNLDELETTDIGFDL 135
Query: 133 EAASGG---GGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCYRDWYTRSQS 189
+ S R + ERE+ECGICLETCTKMVLPNC H+MCI CYR+W +SQS
Sbjct: 136 KRLSKKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQS 195
Query: 190 CPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVPD 241
CPFCRGS+KRV S DLWVL GD+DV+DT T +E++ F+ +I+SLP P+
Sbjct: 196 CPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPE 247
>AT1G24440.1 | chr1:8662340-8663777 FORWARD LENGTH=252
Length = 251
Score = 216 bits (551), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/247 (48%), Positives = 152/247 (61%), Gaps = 13/247 (5%)
Query: 1 MFHGGRPLSLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWM 60
M++ S R SLK LEADI HAN LA I G +QM+L S++AP + L+QWM
Sbjct: 1 MYYQLTKSSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWM 60
Query: 61 DCSCSLSYTLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNL 120
D SC LP Y +L+YKV D + S R+A+++EFY VI P L++L N
Sbjct: 61 DFSC----LLPRYFDFFHILIYKVRADGRWNRS-RYGRKATIREFYGVILPSLERLHINF 115
Query: 121 MEKD------CNEKGWCKEAASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHA 174
+ N K K+ G R Y + D EREDECGICLE CTKMVLPNC HA
Sbjct: 116 ADLPDESLWYPNPKAITKKQYDIEGSR--YMNSIDLEREDECGICLEPCTKMVLPNCCHA 173
Query: 175 MCINCYRDWYTRSQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDS 234
MCI CYR+W T+S+SCPFCRGS+KRV S DLWVLT D+DV+D T+ KE++ F+ I+S
Sbjct: 174 MCIKCYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINS 233
Query: 235 LPLIVPD 241
LP P+
Sbjct: 234 LPKDYPE 240
>AT5G01520.1 | chr5:206797-208399 FORWARD LENGTH=243
Length = 242
Score = 214 bits (545), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 148/239 (61%), Gaps = 17/239 (7%)
Query: 9 SLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLSY 68
S + SLKALEADI ANTLA Y G VQMRLSYS A + L L+QW DC
Sbjct: 4 SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCH----- 58
Query: 69 TLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNLM------E 122
LGLL +L+YK YVD ++S + ER+ S++EFY V++P L QL G + +
Sbjct: 59 -FAGALGLLRILIYKAYVDGKTTMSLH-ERKTSIREFYDVLFPSLLQLHGGITDVEERKQ 116
Query: 123 KDCNEKGWCKEAASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCYRD 182
K+ +K + K+ + G + D ERE+ECGICLE K+VLP CNH+MCINCYR+
Sbjct: 117 KEICDKRYRKKDRTDKGK----MSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRN 172
Query: 183 WYTRSQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVPD 241
W RSQSCPFCRGSLKRV S DLW+ T ++ D + KEN++ +ID LPL+ D
Sbjct: 173 WRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSD 231
>AT3G47160.2 | chr3:17360238-17361879 REVERSE LENGTH=258
Length = 257
Score = 211 bits (536), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/249 (46%), Positives = 151/249 (60%), Gaps = 21/249 (8%)
Query: 8 LSLRGSLKALEADIHHANTLA------HAIHRAYG------GACVQMRLSYSSMAPIILN 55
+S + SLKALEADI HANT+ I RA GA VQMRLSY+ A +L
Sbjct: 4 VSFKDSLKALEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQFLLF 63
Query: 56 LIQWMDCSCSLSYTLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQ 115
L+QW DC L LGLL VL+Y Y D ++S ER+ S+K+FYAVI+P L Q
Sbjct: 64 LVQWTDCH------LAGTLGLLRVLIYMTYADGKTTMSV-YERKTSIKDFYAVIFPSLLQ 116
Query: 116 LEGNLME-KDCNEKGWCK-EAASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNH 173
LE + + D +K CK + K+ + D ERE+ECGIC+E +VLPNC H
Sbjct: 117 LERGITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTH 176
Query: 174 AMCINCYRDWYTRSQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFID 233
++CI CYRDW+ RS+SCPFCR SLKRV S DLW+L D ++ T+E+EN + +I+
Sbjct: 177 SLCIKCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIE 236
Query: 234 SLPLIVPDN 242
LPL+VPD
Sbjct: 237 KLPLVVPDQ 245
>AT5G58787.1 | chr5:23742733-23744324 FORWARD LENGTH=243
Length = 242
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 146/236 (61%), Gaps = 10/236 (4%)
Query: 8 LSLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLS 67
LS + SLKALEADI HANTLA R GA VQMRLSYS A L L+QW DC
Sbjct: 4 LSFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCK---- 59
Query: 68 YTLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNLME-KDCN 126
L +LGLL VL+Y Y D ++S ER+AS++EF AVI P L QL+ + + D
Sbjct: 60 --LAGFLGLLRVLIYMTYADGKTTMSV-YERKASIREFQAVILPSLSQLQRGVTDIDDSK 116
Query: 127 EKGWCKEAASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCYRDWYTR 186
+K CK ++ + ERE+ECGIC+E +K+VLPNC H++CI CYRDW R
Sbjct: 117 QKEVCKMRYRKKDESEMSEIEI--EREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGR 174
Query: 187 SQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVPDN 242
SQSCPFCR SLKRV S DLW+ +D ++ + +EN + +I+ LPL+VPD
Sbjct: 175 SQSCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQ 230
>AT1G23980.1 | chr1:8484879-8485988 REVERSE LENGTH=370
Length = 369
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 143 LYADDKDDEREDECGICL----ETCTKMVLPNCNHAMCINCYRDWYTRSQSCPFCRGSL 197
LY + K + +C +CL E +LPNC+HA I+C W + +CP CRG+L
Sbjct: 131 LYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTL 189
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,836,207
Number of extensions: 256389
Number of successful extensions: 1193
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1231
Number of HSP's successfully gapped: 10
Length of query: 252
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 156
Effective length of database: 8,474,633
Effective search space: 1322042748
Effective search space used: 1322042748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)