BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0905700 Os01g0905700|AK060020
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0905700 Zinc finger, RING-type domain containing protein 505 e-143
Os07g0275300 Zinc finger, RING-type domain containing protein 345 3e-95
Os07g0661600 Similar to RNA-binding protein-like protein 236 9e-63
Os10g0500000 Zinc finger, RING-type domain containing protein 233 1e-61
Os10g0445400 Zinc finger, RING-type domain containing protein 174 8e-44
Os04g0679800 Similar to RNA-binding protein-like protein 121 5e-28
>Os01g0905700 Zinc finger, RING-type domain containing protein
Length = 252
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MFHGGRPLSLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWM 60
MFHGGRPLSLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWM
Sbjct: 1 MFHGGRPLSLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWM 60
Query: 61 DCSCSLSYTLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNL 120
DCSCSLSYTLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNL
Sbjct: 61 DCSCSLSYTLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNL 120
Query: 121 MEKDCNEKGWCKEAASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCY 180
MEKDCNEKGWCKEAASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCY
Sbjct: 121 MEKDCNEKGWCKEAASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCY 180
Query: 181 RDWYTRSQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVP 240
RDWYTRSQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVP
Sbjct: 181 RDWYTRSQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVP 240
Query: 241 DN 242
DN
Sbjct: 241 DN 242
>Os07g0275300 Zinc finger, RING-type domain containing protein
Length = 253
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/243 (70%), Positives = 197/243 (81%), Gaps = 12/243 (4%)
Query: 5 GRPLSLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSC 64
GR L LRG LKALEADIHHANT+A+AI R YGGACVQMRLS SS+AP L LIQW+DC C
Sbjct: 8 GRQLPLRGPLKALEADIHHANTMANAIQRNYGGACVQMRLSCSSLAPFFLYLIQWLDCGC 67
Query: 65 SLSYTLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNLMEKD 124
Y LPSYLGL +L+ KVY D D+S+ST ERRASL+EFYA+IYP LQQLEG+L+E+D
Sbjct: 68 C--YALPSYLGLFHILICKVYADGDSSVST-YERRASLREFYAIIYPILQQLEGSLIERD 124
Query: 125 CNEKGWCKEAASGGGGRKLYAD-----DKDDEREDECGICLETCTKMVLPNCNHAMCINC 179
KG CK+ S RK D +KD EREDECGIC+ETCTKMVLPNC+HAMCI C
Sbjct: 125 LKGKGRCKDIVS----RKRLEDWRKLCNKDVEREDECGICMETCTKMVLPNCSHAMCIKC 180
Query: 180 YRDWYTRSQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIV 239
YRDWY RS+SCPFCRGSLKR+RSRDLWVLT +DV+D VTLE+ENVRHF+S+IDSLPLI+
Sbjct: 181 YRDWYRRSESCPFCRGSLKRIRSRDLWVLTNYNDVVDPVTLERENVRHFYSYIDSLPLIL 240
Query: 240 PDN 242
PDN
Sbjct: 241 PDN 243
>Os07g0661600 Similar to RNA-binding protein-like protein
Length = 242
Score = 236 bits (603), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 119/236 (50%), Positives = 154/236 (65%), Gaps = 9/236 (3%)
Query: 9 SLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLSY 68
S R SLK LEADI HAN+LA R Y GAC+QMR+SY A L L+QW DC+
Sbjct: 4 SFRDSLKVLEADIQHANSLAAEFRREYDGACLQMRMSYCPAAHFFLFLVQWTDCN----- 58
Query: 69 TLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNLME-KDCNE 127
L LGLL +L+YKVY D ++S + ER+AS++EFYAVI+P L QL + E +D +
Sbjct: 59 -LAGALGLLRILIYKVYADGTTTMSAH-ERKASIREFYAVIFPSLMQLHEGINEVEDKKQ 116
Query: 128 KGWCKEA-ASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCYRDWYTR 186
K C E +K+ + DD E+ECGIC+E K+VLP C+HAMCI CYRDW +R
Sbjct: 117 KAICIERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKCYRDWRSR 176
Query: 187 SQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVPDN 242
SQSCPFCR SLKRV S DLW+ T + D++D T+ KEN+R +ID LP ++P+
Sbjct: 177 SQSCPFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVIPET 232
>Os10g0500000 Zinc finger, RING-type domain containing protein
Length = 242
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/233 (51%), Positives = 154/233 (66%), Gaps = 9/233 (3%)
Query: 11 RGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLSYTL 70
+ S K LEADI HANTLA R Y GAC+QMRLSYS A I L L+QW DCS L
Sbjct: 6 KDSFKVLEADIQHANTLASEFPREYDGACLQMRLSYSPAAHIFLFLVQWTDCS------L 59
Query: 71 PSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNLME-KDCNEKG 129
LGLL +LVYKVYVD ++ST+ ER+AS+KEFYAVI+P L QL+ + + +D +K
Sbjct: 60 AGALGLLRILVYKVYVDGTTTMSTH-ERKASIKEFYAVIFPSLLQLQRGITDTEDKKQKA 118
Query: 130 WCKEAASGGGGRKL-YADDKDDEREDECGICLETCTKMVLPNCNHAMCINCYRDWYTRSQ 188
C E + + D ERE+ECGIC+E +K+VLPNC H MC+ CY+DW +RSQ
Sbjct: 119 VCMERYRRRDEDERNILSEIDAEREEECGICMEMNSKVVLPNCTHNMCLRCYQDWNSRSQ 178
Query: 189 SCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVPD 241
SCPFCR +LK+ DLW+ D DV+D T+ +EN+R +I+ LPLIVPD
Sbjct: 179 SCPFCRDNLKKTDPGDLWIYVEDQDVVDLETVSRENLRRLFMYINKLPLIVPD 231
>Os10g0445400 Zinc finger, RING-type domain containing protein
Length = 246
Score = 174 bits (440), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 128/213 (60%), Gaps = 14/213 (6%)
Query: 28 AHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLSYTLPSYLGLLEVLVYKVYVD 87
A R Y GA +QMR++YS++A L+QW+DC L LGLL++++YKVY D
Sbjct: 33 ASEFLRDYDGAVIQMRMAYSAVAHF---LVQWIDCK------LAGALGLLKIMIYKVYAD 83
Query: 88 EDASISTNIERRASLKEFYAVIYPFLQQLEGNLME-KDCNEKGWCKEAASGGGGRKLYAD 146
++ ER AS+++FY VI+P L QL + E D ++ C + R
Sbjct: 84 GTTALP-EWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEER---VS 139
Query: 147 DKDDEREDECGICLETCTKMVLPNCNHAMCINCYRDWYTRSQSCPFCRGSLKRVRSRDLW 206
+ D ERE ECGICLE K+VLP+C H++C+ C+ DW T+S+SCPFCR LK+V LW
Sbjct: 140 EVDLERELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLW 199
Query: 207 VLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIV 239
+ T D DV+D TL +EN+R FI LPL+V
Sbjct: 200 LYTDDRDVVDMDTLTRENIRRLFMFISKLPLVV 232
>Os04g0679800 Similar to RNA-binding protein-like protein
Length = 157
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 78/116 (67%), Gaps = 7/116 (6%)
Query: 9 SLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWMDCSCSLSY 68
S + SLK LEADI HANTLA R Y GAC+QMR+SYS A L L+QW DCS
Sbjct: 9 SFKDSLKVLEADIQHANTLASDFSRDYDGACLQMRMSYSPAAQFFLFLVQWTDCS----- 63
Query: 69 TLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNLMEKD 124
L LGLL +L+YKVYVD ++ST+ ER+AS++EFYAVI+P L QL + + D
Sbjct: 64 -LAGALGLLRILIYKVYVDGTTTLSTH-ERKASIREFYAVIFPSLMQLHKGISDVD 117
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,238,224
Number of extensions: 403992
Number of successful extensions: 1638
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1624
Number of HSP's successfully gapped: 6
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)