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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0445400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.05 (0.0489) R2 : 0.871
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.98 (0.18) R2dC : 0.429 R2C : 0.744
β3 : -3.06 (0.207) R2dE : 0.122 R2E : 0.443
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.339 (0.104) R2dN8 : 0.00393 R2N8 : 0.00179
σ : 0.919
deviance : 389.48
__
_____
C
peak time of C : 17.4
E
wheather : temperature
threshold : 24.98
memory length : 241
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.8
open length of G : 3.53

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
379.41 0.915 9.06 -0.503 5.02 -2.88 0.798 -0.96 0.308 17.4 25 247 1.93 3.4
380.24 0.908 9.06 -0.453 5.04 -2.96 0.876 -- 0.323 17.5 24.98 241 1.83 3.52
380.3 0.908 9.07 -0.467 5.01 -2.9 -- -0.996 0.316 17.4 25 246 1.83 3.48
383.88 0.913 9.06 -0.46 5 -3.03 -- -- 0.29 17.5 24.96 240 1.83 3.52
749.19 1.27 8.77 -0.494 -- -6.37 -- -0.205 0.259 -- 28.52 336 0.0166 6.17
557.61 1.11 9.07 -0.544 6.83 -- 1.94 -- 0.42 17.5 -- -- -- --
566.94 1.12 9.07 -0.55 6.84 -- -- -- 0.429 17.5 -- -- -- --
712.81 1.24 8.86 -0.381 -- -6.41 -- -- 0.775 -- 37.63 336 0.0166 6.18
389.48 0.919 9.05 -- 4.98 -3.06 -- -- 0.339 17.4 24.98 241 1.8 3.53
3004.66 2.56 8.97 -0.778 -- -- -- -- 0.261 -- -- -- -- --
574.9 1.12 9.05 -- 6.85 -- -- -- 0.49 17.5 -- -- -- --
716.59 1.25 8.85 -- -- -6.43 -- -- 0.812 -- 39.91 336 0.0149 6.16
3020.62 2.57 8.95 -- -- -- -- -- 0.347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 386.29 temperature 25.0 270 < th dose independent rect. 2 3
2 390.10 wind 5.0 90 < th dose dependent rect. 3 4
4 394.25 temperature 25.0 270 < th dose independent rect. 1 5
7 395.47 wind 5.0 270 < th dose dependent rect. 3 2
9 396.32 wind 5.0 270 < th dose independent rect. 2 4
10 396.79 precipitation 0.1 270 < th dose independent rect. 2 4
11 396.79 precipitation 0.1 270 < th dose dependent rect. 2 4
47 406.51 wind 5.0 10 < th dose dependent rect. 3 5
50 406.88 temperature 30.0 90 < th dose dependent rect. 3 4
54 407.31 temperature 10.0 270 > th dose independent rect. 2 4
57 407.31 humidity 50.0 270 > th dose independent rect. 2 4
60 407.31 atmosphere 995.0 270 > th dose independent rect. 2 4
61 407.31 atmosphere 1015.0 270 < th dose independent rect. 2 4
62 407.31 radiation 20.0 270 < th dose independent rect. 2 4
65 407.31 temperature 10.0 270 > th dose independent rect. 6 20
69 408.09 wind 9.0 270 < th dose independent rect. 6 20
71 408.52 radiation 40.0 270 < th dose dependent rect. 2 4
90 409.27 humidity 50.0 270 > th dose dependent rect. 2 4
114 410.11 radiation 1.0 270 < th dose independent rect. 2 3
130 412.61 precipitation 0.1 270 < th dose independent rect. 6 20
131 412.61 precipitation 0.1 270 < th dose dependent rect. 6 20
157 414.55 wind 3.0 10 < th dose independent rect. 3 5
161 414.88 atmosphere 1015.0 90 < th dose dependent rect. 3 4
163 415.02 wind 1.0 270 > th dose independent rect. 3 1
241 419.74 atmosphere 1015.0 90 < th dose independent rect. 7 20
246 420.22 atmosphere 995.0 90 > th dose independent rect. 7 20
247 420.44 precipitation 0.1 10 < th dose independent rect. 3 5
248 420.44 temperature 30.0 270 < th dose dependent rect. 1 5
249 420.44 precipitation 0.1 10 < th dose dependent rect. 3 5
329 424.28 temperature 20.0 270 > th dose independent rect. 21 4
350 425.26 atmosphere 1015.0 10 < th dose dependent rect. 4 3
356 425.51 temperature 10.0 270 > th dose dependent rect. 21 4
380 426.30 humidity 50.0 10 > th dose dependent rect. 4 3
384 426.38 humidity 90.0 90 > th dose dependent rect. 4 1
440 427.74 temperature 10.0 270 > th dose dependent rect. 2 4
512 429.02 temperature 10.0 10 > th dose independent rect. 4 3
514 429.02 temperature 30.0 10 < th dose independent rect. 4 3
515 429.02 humidity 50.0 10 > th dose independent rect. 4 3
518 429.02 atmosphere 995.0 10 > th dose independent rect. 4 3
519 429.02 atmosphere 1015.0 10 < th dose independent rect. 4 3
520 429.02 radiation 20.0 10 < th dose independent rect. 4 3
523 429.02 temperature 10.0 10 > th dose independent rect. 7 21
528 429.18 precipitation 0.1 270 < th dose independent rect. 1 20
529 429.18 precipitation 0.1 270 < th dose dependent rect. 1 20
538 429.51 wind 1.0 270 > th dose independent rect. 6 19
556 430.43 wind 9.0 10 < th dose independent rect. 7 21
557 430.49 wind 3.0 10 < th dose independent rect. 5 1
567 430.88 radiation 1.0 10 > th dose independent rect. 5 1
586 431.26 temperature 20.0 10 > th dose independent rect. 23 5
616 432.15 temperature 10.0 10 > th dose dependent rect. 5 1
621 432.30 temperature 10.0 90 > th dose dependent rect. 4 2
634 433.10 precipitation 0.1 10 < th dose independent rect. 5 1
635 433.10 precipitation 0.1 10 < th dose dependent rect. 5 1
637 433.20 humidity 50.0 270 > th dose dependent rect. 21 4
672 433.77 temperature 30.0 10 < th dose dependent rect. 4 3
675 433.89 radiation 40.0 10 < th dose dependent rect. 5 2
677 433.91 precipitation 0.1 10 < th dose independent rect. 8 19
678 433.91 precipitation 0.1 10 < th dose dependent rect. 8 19
729 434.21 temperature 20.0 270 > th dose independent rect. 23 1
733 434.32 temperature 10.0 10 > th dose independent rect. 3 5
735 434.32 temperature 30.0 10 < th dose independent rect. 3 5
736 434.32 humidity 50.0 10 > th dose independent rect. 3 5
738 434.32 atmosphere 995.0 10 > th dose independent rect. 3 5
739 434.32 atmosphere 1015.0 10 < th dose independent rect. 3 5
740 434.32 temperature 10.0 10 > th dose independent rect. 8 19
756 434.41 temperature 10.0 270 > th dose dependent rect. 23 1
771 434.70 wind 9.0 10 < th dose independent rect. 8 19
787 435.15 temperature 10.0 270 > th dose dependent rect. 19 7
791 435.31 radiation 40.0 10 < th dose independent rect. 3 5
795 435.52 wind 9.0 10 < th dose independent rect. 6 23
809 436.03 humidity 60.0 90 > th dose dependent rect. 21 6
810 436.17 atmosphere 995.0 10 > th dose independent rect. 7 21
814 436.28 humidity 50.0 90 > th dose independent rect. 7 20
864 436.76 precipitation 0.1 270 < th dose independent rect. 15 15
865 436.76 precipitation 0.1 270 < th dose dependent rect. 15 15
880 437.16 precipitation 0.1 270 < th dose independent rect. 2 17
881 437.16 precipitation 0.1 270 < th dose dependent rect. 2 17
884 437.21 temperature 15.0 10 > th dose dependent rect. 23 5
892 437.44 precipitation 0.1 270 < th dose independent rect. 2 15
893 437.44 precipitation 0.1 270 < th dose dependent rect. 2 15
945 438.10 wind 1.0 270 > th dose independent rect. 1 5
947 438.10 temperature 15.0 270 > th dose independent rect. 11 10
950 438.14 atmosphere 1015.0 10 < th dose independent rect. 7 21
954 438.18 humidity 50.0 270 > th dose independent rect. 21 14
986 438.66 temperature 10.0 270 > th dose independent rect. 21 14
987 438.66 atmosphere 995.0 270 > th dose independent rect. 21 14