BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0445400 Os10g0445400|AK067013
(246 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47160.2 | chr3:17360238-17361879 REVERSE LENGTH=258 238 2e-63
AT5G01520.1 | chr5:206797-208399 FORWARD LENGTH=243 234 3e-62
AT5G58787.1 | chr5:23742733-23744324 FORWARD LENGTH=243 216 1e-56
AT1G13195.1 | chr1:4501778-4503347 REVERSE LENGTH=261 162 2e-40
AT1G24440.1 | chr1:8662340-8663777 FORWARD LENGTH=252 160 6e-40
>AT3G47160.2 | chr3:17360238-17361879 REVERSE LENGTH=258
Length = 257
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 150/203 (73%), Gaps = 7/203 (3%)
Query: 32 RASEFLRDYDGAVIQMRMAYSAVAHFL---VQWIDCKLAGALGLLKIMIYKVYADGTTAL 88
RA ++ R+ DGA +QMR++Y+ A FL VQW DC LAG LGLL+++IY YADG T +
Sbjct: 35 RALDYPREKDGARVQMRLSYTPAAQFLLFLVQWTDCHLAGTLGLLRVLIYMTYADGKTTM 94
Query: 89 PEWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEE----RVSEVDLE 144
+ER+ SI+ FY VIFPSLLQL GIT+LDDRKQ+ +C ++R +E ++SE+D+E
Sbjct: 95 SVYERKTSIKDFYAVIFPSLLQLERGITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIE 154
Query: 145 RELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLYTDD 204
RE ECGIC+E+N +VLP+C HSLC++C+ DW+ +S+SCPFCR LK+VN LW+ +
Sbjct: 155 REEECGICMEMNNMVVLPNCTHSLCIKCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEK 214
Query: 205 RDVVDMDTLTRENIRRLFMFISK 227
D V+M T+ REN +RLF++I K
Sbjct: 215 SDTVNMYTIERENKKRLFVYIEK 237
>AT5G01520.1 | chr5:206797-208399 FORWARD LENGTH=243
Length = 242
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 148/202 (73%), Gaps = 7/202 (3%)
Query: 33 ASEFLRDYDGAVIQMRMAYSAVAH---FLVQWIDCKLAGALGLLKIMIYKVYADGTTALP 89
ASE+ +YDG +QMR++YS AH FL+QW DC AGALGLL+I+IYK Y DG T +
Sbjct: 23 ASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGALGLLRILIYKAYVDGKTTMS 82
Query: 90 EWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEE----RVSEVDLER 145
ER+ SIR+FY V+FPSLLQL GIT++++RKQ+ +C +++RK + ++SE+DLER
Sbjct: 83 LHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKRYRKKDRTDKGKMSEIDLER 142
Query: 146 ELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLYTDDR 205
E ECGICLE+ K+VLP C HS+C+ C+ +W +S+SCPFCR LK+VN LW+YT
Sbjct: 143 EEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSA 202
Query: 206 DVVDMDTLTRENIRRLFMFISK 227
++ D+ + +EN++RL ++I K
Sbjct: 203 EIADLPAIYKENLKRLLIYIDK 224
>AT5G58787.1 | chr5:23742733-23744324 FORWARD LENGTH=243
Length = 242
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 140/199 (70%), Gaps = 4/199 (2%)
Query: 33 ASEFLRDYDGAVIQMRMAYSAVAHF---LVQWIDCKLAGALGLLKIMIYKVYADGTTALP 89
A ++ R+ DGA +QMR++YS A F LVQW DCKLAG LGLL+++IY YADG T +
Sbjct: 24 ALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCKLAGFLGLLRVLIYMTYADGKTTMS 83
Query: 90 EWEREASIRQFYGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEERVSEVDLERELE- 148
+ER+ASIR+F VI PSL QL G+T++DD KQ+ +C ++RK +E E
Sbjct: 84 VYERKASIREFQAVILPSLSQLQRGVTDIDDSKQKEVCKMRYRKKDESEMSEIEIEREEE 143
Query: 149 CGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLYTDDRDVV 208
CGIC+E+N+K+VLP+C HSLC++C+ DW +S+SCPFCR LK+V+ LW++ D D V
Sbjct: 144 CGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPFCRDSLKRVDSGDLWMFLDQNDTV 203
Query: 209 DMDTLTRENIRRLFMFISK 227
++ + REN +RLFM+I K
Sbjct: 204 NLTAIARENQKRLFMYIEK 222
>AT1G13195.1 | chr1:4501778-4503347 REVERSE LENGTH=261
Length = 260
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 124/215 (57%), Gaps = 12/215 (5%)
Query: 41 DGAVIQMRMAYSAVAH---FLVQWID----CKLAGALGLLKIMIYKVYADGTTALPEWER 93
+ +QM++ +S A FL++WID C + L L +++YKV +DG L R
Sbjct: 42 NNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIPRYLNLFHVLVYKVQSDGQPKLTTHGR 101
Query: 94 EASIRQFYGVIFPSLLQLPSGITELDDRK----QRRLCLQKFRKV-EERVSEVDLERELE 148
+A+I +FYGVI PSL L S + EL+ +RL + ++ R S LERE E
Sbjct: 102 KATISEFYGVILPSLQLLHSNLDELETTDIGFDLKRLSKKITKEARSSRFSNAGLEREEE 161
Query: 149 CGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLYTDDRDVV 208
CGICLE K+VLP+C HS+C++C+ +WN KS+SCPFCR +K+VN LW+ D DVV
Sbjct: 162 CGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGDNDVV 221
Query: 209 DMDTLTRENIRRLFMFISKXXXXXXXXXXXXIYEY 243
D T +RE++ R +++I+ YEY
Sbjct: 222 DTRTASREDLFRFYLYINSLPKDYPEALFVVYYEY 256
>AT1G24440.1 | chr1:8662340-8663777 FORWARD LENGTH=252
Length = 251
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 126/205 (61%), Gaps = 11/205 (5%)
Query: 33 ASEFLRDYDGAVIQMRMAYSAVAHF---LVQWID--CKLAGALGLLKIMIYKVYADGTTA 87
A+E G +QM++ S +A F L+QW+D C L I+IYKV ADG
Sbjct: 28 AAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSCLLPRYFDFFHILIYKVRADGRWN 87
Query: 88 LPEWEREASIRQFYGVIFPSLLQLPSGITELDDRK----QRRLCLQKFRKVEER--VSEV 141
+ R+A+IR+FYGVI PSL +L +L D + +K +E ++ +
Sbjct: 88 RSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYPNPKAITKKQYDIEGSRYMNSI 147
Query: 142 DLERELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWLY 201
DLERE ECGICLE K+VLP+C H++C++C+ +WNTKS+SCPFCR +K+VN LW+
Sbjct: 148 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSIKRVNSEDLWVL 207
Query: 202 TDDRDVVDMDTLTRENIRRLFMFIS 226
T D DVVD +T+T+E++ R ++ I+
Sbjct: 208 TCDEDVVDPETVTKEDLLRFYLHIN 232
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.141 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,967,192
Number of extensions: 195264
Number of successful extensions: 1001
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1038
Number of HSP's successfully gapped: 5
Length of query: 246
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,474,633
Effective search space: 1271194950
Effective search space used: 1271194950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)